Pampinifervens florentissimum: G3M65_09990
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Entry
G3M65_09990 CDS
T11282
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pflo Pampinifervens florentissimum
Pathway
pflo02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pflo00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
G3M65_09990 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pflo03021
]
G3M65_09990 (rpoD)
Transcription machinery [BR:
pflo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
G3M65_09990 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
HTH_10
HTH_64
HTH_17
ARMET_C
Motif
Other DBs
NCBI-ProteinID:
QID34086
LinkDB
All DBs
Position
1738219..1739931
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AA seq
570 aa
AA seq
DB search
MIYKQLMKKLIDVSEKGYVTYDEINELLGPELVDTELYEEIMDFLQERGVKIVETEESVE
EMEKEDAFTVSTESLLLTGKDGDPVRLYLKDMGKIPLLKREEEIMYAKQIEMGRKVMRRG
LLRTSFLIDRVLRDWGEVCNGKLKATDLMDTVDDSKTIEEYEESHEHLERYFIEKGFELA
KAYKEALYWRDSYLFYATPEYKKEYLRRHAKMNRILKDMKLKHSKFERIADELLNLYNRY
TRKLKEFEVRKKKLEGIHPDIEELVRNYDQDETLQKKAERAGYGFARFQMLRDEYLTLKR
EIEDLRREMGILPEELQRVIHIIREGRTKVTQAKQVMVKCNLRLVVSIAKKYVNRGLHFL
DLIQEGNIGLMKAVDKYDYRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETIND
ITKAHKKLFQELGREPTAEEIAKYLGISPEKARKVMRVSQEPVSLETPIGDDEETHLKDF
IEDKSVPSPEEQVSRKLLREQLIKVLSTLGEKEKEILMYRYGLVDGIEYTLEQIGKMFNV
TRERIRQLETKAIRKLRHPARAKYLKDFEL
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atgatatacaaacagctcatgaaaaagctaattgatgtaagtgaaaagggctatgtaacc
tacgacgaaatcaacgagcttcttggacctgagcttgtggatacggagctctacgaagag
ataatggactttcttcaggagagaggagtaaagatagtggaaacagaagagtctgtggag
gagatggaaaaggaagatgcctttaccgtttccaccgagagcttactccttacgggtaaa
gatggggacccggtaaggctttatcttaaagacatgggtaagatacctctcctcaaaagg
gaagaggagataatgtatgcaaagcagatagagatgggaagaaaggtaatgagaaggggg
cttttaagaacctcttttctcattgacagagttttgagagattggggagaggtatgcaat
ggcaagctaaaggctacagaccttatggatacggtagatgacagtaagaccatagaagaa
tacgaagaaagccacgagcatttagaaagatacttcatagaaaagggttttgagttggca
aaggcatacaaagaagccctctattggagagattcctaccttttctacgcaacgccagaa
tacaaaaaggaatatctaagaagacatgctaagatgaacagaatcctcaaagatatgaaa
ctcaagcattccaagtttgaacgaattgcggatgagcttttaaacctatacaacagatac
acacggaagctaaaggagtttgaggtaaggaagaaaaagttagaaggcatacacccagac
atagaagagctcgtgcggaattacgaccaagacgaaactctacagaaaaaagcagagagg
gcaggttatggctttgcaaggtttcagatgcttagagatgaatatcttaccctcaagaga
gaaatagaagaccttaggcgcgaaatgggcattctcccagaggagcttcaaagggtcata
cacataataagagaaggcaggacaaaggtcactcaagcaaaacaggtgatggtaaaatgc
aacctcagacttgtagtttccatagccaaaaagtatgtgaacagaggtcttcacttcctt
gaccttattcaagagggcaacatagggcttatgaaggcagtggataaatacgactacaga
aaaggttacaagttttctacctatgccacctggtggattcgtcaggcaataacgagggct
atagcagaccaagcaagaaccatacgcatacctgttcacatgatagaaaccataaacgac
ataacaaaggcacacaaaaagctcttccaagagcttggtagagagccaaccgcagaggaa
atagctaagtatcttggtatatcaccagaaaaggcaagaaaggtgatgagagtatcccaa
gaacccgtatctcttgaaacacctataggagacgacgaagaaacccatctgaaagacttt
atagaagacaagagtgtcccatcgcccgaggagcaggtttcaagaaaacttctcagagaa
cagctcataaaggtgctaagcacccttggtgagaaggaaaaggaaattctcatgtatagg
tatgggcttgtggacggcatagagtataccctcgagcagataggcaagatgtttaacgta
acaagggaaaggattcgtcagcttgagacgaaggcaataagaaagctaagacatcccgca
agggctaagtatctgaaagactttgagctttaa
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