Perca fluviatilis (European perch): 120550847
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Entry
120550847 CDS
T11622
Name
(RefSeq) ATP-dependent RNA helicase DHX8
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
pflt Perca fluviatilis (European perch)
Pathway
pflt03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pflt00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120550847
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pflt03041
]
120550847
Enzymes [BR:
pflt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120550847
Spliceosome [BR:
pflt03041
]
Complex C
Other components
Step II factors
120550847
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
WHD_HA2
DEAD
AAA_22
GIPC1_GH2
AAA_19
nSTAND3
AAA_16
Flavi_DEAD
T2SSE
PhoH
Sigma54_activ_2
TsaE
ABC_tran
Motif
Other DBs
NCBI-GeneID:
120550847
NCBI-ProteinID:
XP_039643678
LinkDB
All DBs
Position
21:7323658..7336099
Genome browser
AA seq
1216 aa
AA seq
DB search
MADGGVDELSQLEYLSLVSKVCTELDNHLGISDKDLAEFVIDLAEKQPTFDGFKALLLQN
GAEFTDSLIGNLLRLIQTMRPPSKSSTSKACEALVKPKTEKDRLKELFPALCRPNDPVPK
KLLDEDDVKVAADAMKELEMFMPSVSGTESKSSKSRSEKSRRHSRSRSRERDRHRDRDRD
RDRDRDKDRKRRHRSRSRSRSRDRDRHRDGDRDKDRGKRRDKSSRWSERSPSPKKDQDKD
SDRWKDKHVDRPPPEEPSVGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGR
VANVADVVSKGQRVKIKVLSFTGSKTSLSMKDVDQETGEDLNPNRRRNVGPDGGDEISMR
NPDRPSNLNLGHPPELEQDDTLERKRLTKISDPEKWEIKQMIAANVLSKEEFPDFDDETG
ILPKVDDEEDEDLEIELVEEEPPFLRGHTKQSMDMSPVKIVKNPDGSLSQAAMMQSALAK
ERRELKQAAREAEMDSIPMGLNKHWVDPLPDVDGRQIAANMRGIGMMPNDIPEWKKHAFG
GNKASYGKKTQMSILEQRESLPIYKLKEQLIQAVHDNQILIVIGETGSGKTTQITQYLAE
AGYTTRGKIGCTQPRRVAAMSVAKRVSEEYGCCLGQEVGYTIRFEDCTSPETVIKYMTDG
MLLRECLIDSELGQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRTDMKLIVTSATLDAVK
FSQYFYEAPIFTIPGRTYPVEVLYTKEPETDYLDASLITVMQIHLTEPPGDVLVFLTGQE
EIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVVIATNIAET
SLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGPGKCYRLYT
ERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLITAMEQLYTL
GALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNVFYRPKDK
QALADQKKAKFHQPEGDHLTLLAVYNSWKNNKFSNPWCYENFIQARSLRRAQDIRKQMLG
IMDRHKLDVVSCGKATVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALFNR
QPEWVVYHELVLTTKEYMREVTTIDPRWLVEFSPAFFKVSDPTRLSKQKKQQRLEPLYNR
YEEPNAWRISRAFRRR
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
atggcagacggtggagttgacgagctatcgcagcttgaatatttgtctttggtgtccaag
gtctgcacggagcttgacaaccatctgggaataagtgacaaagatttagctgaatttgtc
atcgaccttgctgaaaaacagccgacctttgacggattcaaagctcttttgcttcaaaat
ggagcggaattcacagattctctcattggtaatttgctcaggctcattcagactatgcga
cctccatccaagtcatctacgagtaaagcctgtgaggctttggtcaagccgaagacagaa
aaggataggttgaaggagctgtttcctgcactgtgtagaccaaatgatccagtgccaaag
aagctattagatgaagatgatgtgaaggtagcagctgatgccatgaaagagctggagatg
tttatgcccagtgtcagtgggacagagtccaaaagcagcaagagcaggtcagaaaagagc
agacgccacagcagaagtcgaagcagagaaagagacaggcacagagatcgtgatagagat
cgggacagagatcgggataaggacaggaagaggcggcatcgctcaaggtccaggtctcgc
tccagagaccgtgatcggcaccgagatggagacagagacaaagatcgcggcaaaagaaga
gacaaatcttcccgctggtctgagcgctcacctagccccaaaaaagaccaagacaaagac
tctgaccgctggaaggacaaacatgtggaccgaccaccaccagaggaaccttctgttgga
gacatatacaatggcaaagtcaccagcattatgcagtttggatgctttgttcagttggag
ggattaaggaaacgatgggagggtttggtccacatttccgagctgcgtagggagggtcgt
gtggccaacgtggctgatgttgtcagcaaaggccaaagagtcaagatcaaggttctctca
ttcaccggctccaagaccagcctcagtatgaaggatgtggaccaggagacaggagaagac
ctgaaccccaacaggaggaggaacgtaggcccagacggaggggatgagatctccatgaga
aaccccgaccggcccagcaacctgaacctgggacacccccctgagctggagcaggacgac
accttggagcgcaagaggctcaccaaaatttcggacccagagaagtgggagatcaaacag
atgattgctgctaacgtcttgtccaaagaagagttccctgattttgatgacgagacaggg
atccttcctaaagttgatgatgaagaggatgaagatttggaaattgagctggttgaagag
gagcccccgttcctgaggggacacaccaaacaaagcatggacatgagccctgtcaagatt
gtcaagaatccagatggctctctgtctcaagcggccatgatgcagagcgctctggctaag
gagagacgagagttgaagcaggctgcacgagaggcagagatggactccatccccatgggg
ttgaataaacactgggtcgacccgctgccagacgttgatggtaggcagattgcagctaac
atgagaggcattggcatgatgcctaatgacatcccagagtggaagaagcatgcttttgga
ggcaacaaggcctcttatggaaagaagacccaaatgtccatcctggagcagagggagagc
ctgcctatctacaagctgaaggagcagctcattcaggctgtccatgataaccagatcctg
attgtgattggagagacggggtctggtaagaccacgcagatcactcagtacctggcggag
gcaggctacaccaccagggggaagattggctgtacgcagccccgtcgtgtagccgccatg
tcagtggccaagagggtctccgaggagtatggttgctgtctaggccaagaggtgggttac
accatccgttttgaggactgtactagccccgagacggtgatcaagtacatgacggacggt
atgctgttgagagagtgtctgatcgactctgaattgggccagtacgccattatcatgttg
gatgaagctcacgagaggacaatccacactgatgttctatttggtttgctcaagaagact
gtacagaaacgcacagacatgaaactgattgtaacatcagccacattggacgccgtgaag
ttctctcagtatttctacgaagcgcccatcttcaccatcccaggaagaacttacccagta
gaggttctctacaccaaagaacctgagacagactacctggatgccagtctcatcacagtc
atgcaaattcatctgacggaaccaccaggtgacgtcctggtgtttctgactggacaggaa
gagatcgacaccgcttgtgagatcttgtatgagagaatgaagtcactggggcctgatgtt
cccgagctgattattcttccagtttattctgccctgcccagtgagatgcagacaagaatc
tttgacccggctcccccaggcagcagaaaggtggtcattgccaccaacattgcagaaaca
tctctgaccatcgatggaatctattatgtggtggaccctggttttgtcaagcaaaaagtg
tacaactcaaagactggcattgaccagctggttgtgactcctatctcacaggcccaggcc
aagcagagggcaggtcgagctggcagaacaggcccagggaagtgttacaggctctacacc
gagagagcctacagagacgagatgctgaccaccaacgtgcctgagatccagagaaccaac
ttggccagcactgtgctctctctgaaggccatgggcatcaatgacctcctgtcttttgac
ttcatggatgctcctcccatggagactctgatcacagccatggagcagctctacactctg
ggagctctggatgatgaaggcttactcacacggctgggcagaaggatggcggagtttcct
ctggagcccatgctgtgtaagatgttgatcatgtccgtccatctgggctgcagtgaagag
atgctcaccatcgtgtcaatgctgtcggtgcagaacgtcttctacaggcccaaggacaag
caggccttggccgaccagaagaaggcaaagtttcaccaacctgagggggatcacttgacc
ctgctggcggtttacaactcctggaagaacaacaagttctccaacccctggtgttatgag
aacttcatccaggctcgctccctgcgcagagcccaggacatccgcaaacagatgctgggt
atcatggacagacataaactggatgtggtatcttgtggcaaagccacagtacgggtccag
aaagccatctgcagtggcttcttcaggaatgcagctaaaaaggatcctcaagaaggctac
cggacccttatagaccagcaagttgtatacatccacccctccagcgctctgttcaaccgc
cagcctgagtgggttgtgtaccatgagttggtgctgaccaccaaggagtacatgcgggag
gtaaccaccatcgaccctcgctggctggtggagttttcacctgccttcttcaaagtgtcc
gaccccacgcgcctcagcaagcagaagaaacaacagcgcctcgagcctctgtacaaccgt
tacgaggagcccaacgcttggagaatctctcgtgccttcagacgccgttga
DBGET
integrated database retrieval system
