Perca fluviatilis (European perch): 120550848
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Entry
120550848 CDS
T11622
Name
(RefSeq) ATP-dependent RNA helicase DHX8-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
pflt Perca fluviatilis (European perch)
Pathway
pflt03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pflt00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120550848
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pflt03041
]
120550848
Enzymes [BR:
pflt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120550848
Spliceosome [BR:
pflt03041
]
Complex C
Other components
Step II factors
120550848
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
WHD_HA2
DEAD
AAA_22
GIPC1_GH2
Flavi_DEAD
AAA_19
ABC_tran
nSTAND3
T2SSE
AAA_16
TsaE
AAA_30
Sigma54_activ_2
PhoH
Motif
Other DBs
NCBI-GeneID:
120550848
NCBI-ProteinID:
XP_039643679
LinkDB
All DBs
Position
21:7337021..7348751
Genome browser
AA seq
1195 aa
AA seq
DB search
MATLDEIKRLEYLSLVSKVCTELENHLGISEKDLAEFIISLAEKHPTFEDFKAALLKNGA
DFTDTFVGNLHRLIQTMRAPPSTSKAHQPTREDKLKEKFPALCKPDDPVWMFPPRHTDKD
DQQVAAAAMKELEMLMPNFCGTSSDNGNLPSDRSRDTDRQTGCQQIRPRSRSRDREGETN
PKPKRKRVSRWSDHPPSPRRDDDNNNNSSSSSNNNNNNKKDNRDSNCLRDRLVDRPPPEE
PVVGDIYNGKISSIMQFGCFVQLEGLRKRWEGLVHISELRKEGRIANVADVVTKGQKVKV
KVLSFTGTKASLSMKDVNQETGEDLNPNRRRNLDTAVGDEAMRNPDRPVEASMVELEENP
TERKRLSKITDLEKWEIKQMIAANVLPKEEFPEFDEETGILPKIDDDEDVELEIDLVEEE
PPFLRGQTKWSTTMSPVKIVKNPDGSLSQAAMMQSALAKERRELKQAARAAELDAIPTGL
HKNWIDPMPDYEGRQIAANMRGIGAMPVDLPEWKRQAFGGNQVSYGKKTELSILQQRESL
PIYKLKAELVQAVHDNQILIVVGETGSGKTTQITQYLAEAGYTSRGKIGCTQPRRVAAMS
VAKRVSEEYGCCLGQEVGYTIRFEDCTSTETVIKYMTHGMLQRECLLDPDMSQYSLIMLD
EAHERTIHTDVLFGLLKKTIQKRKDMKLIVSSATLDAVKFSQYFYEAPIFTIPGRTFPVE
VLYTKEPETDYMDASLITVMQIHLTEPPGDVLVFLTGQEEIDTACEILYERMKSLGPNVP
ELIILPVYSALPSEMQTRIFDPAPLGSRKVIIATNIAETSLTIDGIYYVVDPGFVKQIVY
NSKSGIDQLVVTPISQAQAKQRSGRAGRTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNL
ASTVLSLKAMGINDLLAFDFMDPPPMETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPL
EPMLCKMLIMSVHLGCSDEMLTIVSMLSVQNIFYRPKDKQAQADQKKTKFFQPEGDHLTL
LAVYNSWKNNKFSNPWCFENFIQARSLKRAQDIRKQMMSIMDRHKLDVVSCGTATVRVQK
AICSGFFRNSARKHPHDGYRTLIDQQVVYLHPSSTLFNRQPEWLVYHELVLTTKEYMREV
TTIDPRWLVEFAPAFYRVADPTRLSRQKRQQKLEPLYNRYEEPNAWRISRAFRRR
NT seq
3588 nt
NT seq
+upstream
nt +downstream
nt
atggctactttagacgaaataaagcgtcttgaatatttatctttggtttcaaaggtgtgt
acggagttggagaatcatctaggaataagcgaaaaagatctggccgaatttatcatcagc
ctggccgaaaaacacccaacatttgaggatttcaaagcagctctgttaaaaaatggagca
gattttacagacacctttgttggtaacttacatagacttattcaaaccatgcgagcccca
ccatctactagtaaagctcatcagccaacacgtgaggacaagctgaaagagaaattccct
gccttatgtaaaccagatgatcctgtgtggatgtttccaccacgccacacagataaagat
gatcagcaggttgcagcagcagccatgaaggagctggagatgctcatgcctaacttctgt
ggaacaagctccgataatggaaatttgcccagtgacagaagtcgagacacagacaggcag
actggatgtcagcaaattcgtcctcgctcaagatcaagagatcgggaaggagaaacaaac
cctaagcccaaaaggaaacgagtgtctcgctggagtgaccatccacccagccctcgcaga
gacgatgacaacaacaacaacagcagcagcagcagcaacaacaacaacaacaacaagaag
gataaccgagactctaactgtttacgtgatagacttgtggatcgccctccgccagaggag
cctgttgtgggcgacatctacaacggcaaaatcagcagtattatgcaatttggatgtttt
gtgcagctagagggcctcaggaaacgctgggaaggcctggtgcacatctcagaactgcgc
aaagaaggacgtatagccaatgtggctgacgtggtcaccaaaggccaaaaggtgaaggtc
aaagtgctgtcattcactggaaccaaagccagcctcagcatgaaggatgtcaaccaagag
acgggggaggacttgaaccccaaccggagaagaaacctggacactgcagtcggagacgag
gccatgaggaaccccgaccgccctgttgaagccagcatggtggaactggaggaaaaccca
accgaacgcaaacggctttccaagataactgaccttgaaaaatgggaaattaaacagatg
attgcagccaacgtacttcctaaagaagaattcccagaatttgacgaggagacgggaatc
cttcctaaaatagatgatgatgaagatgtagaattagagattgatctagtggaagaggaa
ccaccattcctgaggggacagactaaatggagcacaaccatgagcccagtcaaaatagta
aagaatccagacggctccctctcccaagcagccatgatgcagagcgctcttgcgaaggag
aggagagagctgaagcaggcggctcgcgcagcagagttggacgccatccctacgggtctc
cacaagaactggatagaccccatgcctgattatgaaggaaggcagattgctgctaacatg
agaggcatcggcgctatgcctgtcgatcttccagagtggaaaagacaagccttcggaggg
aaccaggtgtcgtatggcaagaagacagaactgtccatcctgcagcagagagagagtctg
cctatttacaagcttaaggcagagcttgttcaggctgtccacgataatcagatcttgatc
gtagttggagagacggggtctggtaagaccacgcagatcactcagtacctggcggaggca
ggctacacctcccgggggaagattggctgtacgcagccccgtcgtgtagccgccatgtcg
gtggccaagagggtctccgaggagtatggttgctgtctaggccaagaggtgggttacacg
attcgttttgaggactgcaccagtactgagacagtaatcaagtacatgacccatggtatg
ctgcagagggagtgtctgctggacccagacatgagtcagtattccctcattatgctcgac
gaggcccacgagagaacaatccacaccgacgtgctctttggccttctcaagaagacgata
cagaaacgcaaagacatgaaactgatcgtgtcctctgctacgctggacgccgtgaagttc
tcccagtatttttacgaagcgcccatcttcaccatcccaggaaggactttcccagtggag
gttctctacaccaaagaacctgagacagactacatggatgccagtctcatcactgttatg
cagatccatctaaccgagcccccaggtgacgtcctggtgtttctgactggacaggaagag
atcgacaccgcttgtgagatcttgtatgagagaatgaagtcactggggccgaacgttccc
gagctgattattctgccagtttactccgcgctgcccagcgagatgcagacaagaatcttt
gaccctgcacccctaggcagcagaaaggtcatcattgccacaaacattgctgagacgtct
ctcactattgatggaatctactacgtggtggaccctggctttgttaaacagattgtgtat
aattccaagtcgggcatcgaccagcttgtggtgactccaatatcacaggcccaggccaag
cagaggtcgggtcgagccggcagaacgggcccagggaagtgttacaggctctacaccgag
agagcctacagagacgagatgctgaccaccaacgtgcctgagatccagagaaccaacttg
gccagcactgtgctctctctgaaggccatgggcatcaatgacctcctggcttttgacttc
atggaccctcctcccatggagactctgatcacagccatggagcagctctacactctggga
gctctggatgatgaaggcttactcacacggctgggcagaaggatggcggagtttcctctg
gagcccatgctgtgtaagatgttgatcatgtccgtccatctgggctgcagtgacgagatg
ctcaccatcgtgtcaatgctgtcggtgcagaacatcttttacagaccaaaggacaaacag
gcccaggctgaccagaaaaagacaaagttcttccagcccgagggagaccaccttacgttg
ctggctgtctacaactcgtggaagaacaacaagttctccaacccctggtgtttcgagaac
ttcatccaagcccgctcattaaagagagctcaggacatacgcaagcagatgatgagcatc
atggacagacacaagttagacgtggtatcctgtggaacagctacggtgcgggtccagaaa
gctatctgcagcggtttcttcaggaactcggccaggaagcaccctcatgatgggtaccgt
accctgattgaccagcaggtggtgtacctccacccctccagcactctctttaaccgccag
ccagaatggcttgtgtaccatgagttggtgctgaccaccaaggagtacatgcgggaggtg
accaccatcgaccctcgctggctggtggagtttgcgccggctttctacagagttgccgat
cccacgcgcctcagcaggcagaagaggcaacagaaactggaacctctctacaaccgctac
gaggagcccaacgcttggagaatctcccgcgcgtttagacgacgctga
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