Perca fluviatilis (European perch): 120553720
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Entry
120553720 CDS
T11622
Symbol
rtcb
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pflt Perca fluviatilis (European perch)
Brite
KEGG Orthology (KO) [BR:
pflt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pflt03016
]
120553720 (rtcb)
Enzymes [BR:
pflt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
120553720 (rtcb)
Transfer RNA biogenesis [BR:
pflt03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
120553720 (rtcb)
Prokaryotic type
tRNA splicing ligases
120553720 (rtcb)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
120553720
NCBI-ProteinID:
XP_039648345
UniProt:
A0A6A5E865
LinkDB
All DBs
Position
23:2014378..2031503
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AA seq
506 aa
AA seq
DB search
MSRSYNDELQYLEKKGKNCWRIKKGFVPNMQVEGVFYVNEPLEKLMFEELRQACGGRGGV
GGFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNNPDAVVSPGGVGFD
INCGVRLLRTNLDEGDVQPVKEQLAQALFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWS
LREGYAWAEDKEHCEEYGRMLQADPNKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIYN
DYAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIM
SPEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFSKVFVTTPDDLDMHVIYDVSHNIAKVE
EHMVDGKQKTLLLHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGM
TETFGTTCHGAGRAMSRAKSRRNLDFQDVLDKLADQGIAIRVASPKLVMEEAPESYKNVT
DVVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atgagtcggagttataacgatgagctccagtatctggagaagaagggcaagaactgctgg
aggattaagaaaggctttgtcccaaacatgcaggtggagggagtcttctacgtgaacgaa
cctctggagaaactgatgtttgaggagcttcgccaggcctgcggagggagaggcggtgtg
ggtggattccttccagccatgaaacaaatcgggaacgtggcggcactgccggggattgta
cacaggtccatcggtctcccagacgttcactccggatatggatttgcgatcggaaacatg
gctgccttcgacatgaacaaccccgatgctgtggtgtctccaggcggcgtcggtttcgac
ataaactgcggcgtacgtctgctgaggacgaacctggacgaaggggacgtccaaccggtg
aaggagcagctggcccaggcgctgttcgaccacatccccgtgggggttgggtccaaggga
gtcatccccatgggggccaaggacctggaggaagctctggagatgggagtggactggtct
ctgagggaggggtacgcctgggccgaggacaaggagcactgcgaggagtacggccgtatg
ctgcaggccgaccccaacaaagtctcctccaaggccaagaagagaggcctgccgcagctg
gggactctgggagcaggaaaccactacgctgagatccaggtggtggacgagatctacaac
gactacgctgccaagaagatgggcatcgaccacaaaggtcaggtgtgcgtgatgatccac
agcggcagccgagggctcggacaccaggtcgccacagacgctctggttgccatggagaag
gcgatgaagagagataagatcatagtgaacgaccgccagctggcgtgcgctcgcatcatg
tcgccggaaggccaggactacctgaagggcatggcggccgcggggaactacgcctgggtc
aaccgctcgtccatgaccttcctcacccgacaggccttttctaaagtgtttgtcacgacg
ccggacgacctggacatgcacgtcatctacgatgtttcgcacaacatcgccaaagtggag
gagcacatggtggacgggaagcagaagactctgctgctccaccgcaaagggtccaccaga
gctttccccccccaccacccactcatccccgtagactaccagctcaccggtcagccggtg
ttgatcggcgggaccatggggacctgcagctacgtcctcaccgggacggagcagggcatg
acggagacgttcggcacaacgtgccacggagcgggtcgtgcgatgtctcgggccaagtcc
cgcaggaacctggacttccaggacgtcctggacaagctggcggaccagggcatcgccatc
cgcgtggcctcgcccaaactggtgatggaggaggctcccgaatcgtacaaaaacgtgaca
gacgtggtcaacacgtgtcacgacgctggaatcagcaagaaggcgatcaaactgcggccg
atcgccgtgattaaaggctga
DBGET
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