Perca fluviatilis (European perch): 120556082
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Entry
120556082 CDS
T11622
Symbol
smarca5
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5
KO
K11654
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-]
Organism
pflt Perca fluviatilis (European perch)
Pathway
pflt03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pflt00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
120556082 (smarca5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pflt03021
]
120556082 (smarca5)
03036 Chromosome and associated proteins [BR:
pflt03036
]
120556082 (smarca5)
Transcription machinery [BR:
pflt03021
]
Eukaryotic type
RNA polymerase I system
Other transcription-related factors
NoRC (nucleolar remodeling complex)
120556082 (smarca5)
Chromosome and associated proteins [BR:
pflt03036
]
Eukaryotic type
Chromatin remodeling factors
CHRAC complex
120556082 (smarca5)
RSF complex
120556082 (smarca5)
WICH complex
120556082 (smarca5)
B-WICH complex
120556082 (smarca5)
NORC complex
120556082 (smarca5)
BRF complex
120556082 (smarca5)
NuRF complex (fruit fly)
120556082 (smarca5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
SLIDE
HAND
Helicase_C
ResIII
DEAD
HDA2-3
Myb_DNA-binding
DBINO
AAA_14
Motif
Other DBs
NCBI-GeneID:
120556082
NCBI-ProteinID:
XP_039651404
LinkDB
All DBs
Position
1:31692582..31701732
Genome browser
AA seq
1034 aa
AA seq
DB search
MSELLSCVEQREEQTEVEEAGGAEEKSDSSDAGKESSSDAGPEGQDASSSSSSKKVPAPG
YEEKVQTDRTNRFEYLLKQTELFAHFIQPAAQKTPTSPLKMKPGRPRIKNDEKQNLLSAG
DNRHRRTEQEEDEELLSESTKTTNVCTRFDDSPSYVKSGKMRDYQVRGLNWLISLYENGI
NGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLYNWMNEFKRWVPSLRAVC
LIGDREERNALIRDVLLPGEWDVCVTSYEMLIIEKAVFKKFNWRYLVIDEAHRIKNEKSK
LSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTNNCLGDTK
LVERLHTVLRPFLLRRIKADVEKTLLPKKEIKMYVGLSKMQREWYTKILMKDIDILNSAG
KMDKMRLLNVLMQLRKCCNHPYLFDGAEPGPPYTTDLHLVVNSGKMVVLDKLLPKMKDQG
SRVLIFSQMTRVLDILEDYCMWRNYGYCRLDGQTPHEERQVSINAYNEPNSSKFIFMLST
RAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQQKQVRVFRFITENTVEERIVE
RAEMKLRLDSIVIQQGRLVDPSANKLGKDEMLSIIRHGATHVFASKESEITDDDIDAILE
RGERKTMEMKEKLSSLGESTLRNFTMDTENSSVYTFEGEDYREKKKVITNWIEPPKRERK
ANYAVDAYFREALRVSEPKAPKAPRPPKQPNVQDFQFFPPRLFELLEKEILFYRKTIGYK
VPRNPEMPNSAQLQKEEQGKIDEAEALAEEELEEKENLLQQGFTIWNKRDFNQFIKANEK
WGRDDIENIAREVEGKTPEEVMEYSAVFWERCNELQDIEKIMAQIERGEARIQRRISIKK
ALDSKIGRYKAPFHQLRISYGTNKGKNYTEEEDRFLICMLHKLGFDKESVYDELRQCIRN
SPQFRFDWFLKSRTAMELQRRCNTLITLIERENMELEEREKAEKKKRGPKSGSAQKRKSE
ATPDGRGRRKKLKL
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaactcctgagctgcgtggaacagcgcgaagaacagactgaagttgaagaagcc
ggaggagcagaggagaagtcagattcttcagatgctggaaaagagtcctcttcagatgcc
gggcccgaaggacaagatgcctcctcctcctcgtcatccaagaaagtacctgctccgggc
tatgaggagaaagtgcaaacagaccggaccaacagatttgagtacctgttgaagcaaaca
gagctgtttgctcatttcatccaaccagccgcacagaagacccccacctccccgctgaag
atgaagccagggcgtcctcgcatcaagaatgatgagaaacagaacctgctgtctgccgga
gacaaccgacaccgccgcacagagcaagaggaggatgaagagcttctaagcgagagcacc
aagacgactaatgtctgcacacgctttgatgactctccctcctatgtcaagtcaggaaaa
atgagagactatcaggtccgtgggctgaactggctcatctctttgtacgagaatggcatc
aacggcatcctcgctgacgaaatgggtttggggaagaccctgcagactatttccctgctg
ggttacatgaagcactacagaaacatccctggtccccacatggtgctggtgcccaagtcc
accctctacaactggatgaatgagttcaagagatgggtgccttcgctccgtgcagtctgc
ttgatcggagaccgagaggagagaaatgccctgatcagagatgtgctgttgcctggagaa
tgggatgtgtgtgtcacatcctacgagatgctcatcattgaaaaggcagtgttcaagaag
ttcaactggagatacctggtcatcgacgaagcccacagaatcaagaatgagaaatcaaaa
ctatcggagatcgtgcgagaatttaagaccaccaatcgtttgttgctgactggaacaccc
ctgcaaaacaaccttcacgagctgtgggctctgctgaacttcctgctccctgacgtcttc
aactcagcagacgactttgattcctggtttgacacaaacaactgcttgggtgatacaaag
ttggttgaacgtcttcacactgttctgcgtcccttcttgcttcgtcgtataaaagctgac
gtagagaagactctgcttccgaaaaaagagatcaagatgtatgtgggtctgagtaagatg
cagcgagagtggtacacaaagatcctgatgaaggacattgacatactgaactcggcgggt
aagatggacaagatgcgtctgctgaacgttctcatgcagctgaggaaatgctgcaaccac
ccgtacctcttcgacggggccgagccgggccccccatacacgactgacctccacctggtg
gtgaacagtggcaagatggtggtgctggacaagctgctacccaagatgaaggatcagggt
tctcgtgtgctcatcttcagtcagatgaccagggtgctggacatcttggaggactactgc
atgtggaggaactatggctactgccgcctggatggccagacgccgcacgaagagagacag
gtctctatcaacgcatacaatgagcccaacagctctaagttcatcttcatgttgagcacc
agagctggaggactgggtatcaacctggctacagcggatgtggtcatcctgtacgactcg
gactggaacccccaagtcgatcttcaggccatggaccgagctcacaggattggtcaacag
aagcaggtacgcgtctttcgtttcatcaccgaaaacacagtggaggagaggattgtggag
agggccgagatgaaactgcgcctggactccattgtgatccagcaaggaagacttgtggat
ccaagcgcaaacaagctgggcaaggatgagatgctgtccatcatccgccacggtgccaca
cacgtgtttgcctccaaagagagtgagatcacagatgatgacattgatgcaatcctggag
agaggtgaaagaaagaccatggagatgaaggagaagctgtcttcactgggtgagagtact
ctgagaaacttcaccatggacaccgagaacagcagtgtgtacacattcgaaggagaagat
tatagagagaagaaaaaggtcattaccaactggatcgagccacccaagagagaaaggaaa
gccaattacgctgtggatgcttacttcagggaggctctgcgagtcagtgagcccaaagca
cccaaggctcctcgtcctcccaagcagccaaatgtccaggacttccagttcttccctcca
cgtctttttgagcttctagaaaaggaaattctgttctacaggaagaccataggctacaag
gttccccgtaacccagaaatgccaaattcagctcagctgcagaaagaagagcagggtaag
atcgacgaggctgaggctctggcagaggaagaactggaggagaaggagaacctgctgcaa
cagggatttactatttggaacaaacgtgacttcaaccagttcatcaaagccaacgagaag
tggggaagagatgatattgagaacattgccagagaagttgagggaaaaactccagaggag
gtcatggaatattctgcggtattctgggagcgctgtaatgagctgcaggacatcgagaag
ataatggcccagatagagagaggagaggccaggatccagagaaggattagcatcaagaaa
gcactggactcaaagattggtcgctacaaggctcccttccatcagctccgtatctcctat
ggcaccaacaaaggcaagaactacacagaggaggaggaccgcttccttatctgtatgctc
cacaagctgggcttcgacaaggagagcgtgtatgacgagctgcgtcagtgcatacgcaac
tcgcctcagttccgctttgactggttcctcaaatccaggactgccatggagcttcagagg
cgatgcaacaccctgattacactgatagagagagagaacatggagctggaggagagggag
aaggctgagaagaagaaacgtggcccaaagagtggctcagcccagaaacggaagtcagag
gcaaccccagatggtcgtggacgcaggaaaaagctcaagttgtga
DBGET
integrated database retrieval system
