Perca fluviatilis (European perch): 120557426
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Entry
120557426 CDS
T11622
Symbol
col2a1b
Name
(RefSeq) collagen, type II, alpha 1b isoform X1
KO
K19719
collagen type II alpha
Organism
pflt Perca fluviatilis (European perch)
Pathway
pflt04510
Focal adhesion
pflt04512
ECM-receptor interaction
pflt04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
pflt00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120557426 (col2a1b)
04518 Integrin signaling
120557426 (col2a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
120557426 (col2a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pflt00536
]
120557426 (col2a1b)
Glycosaminoglycan binding proteins [BR:
pflt00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120557426 (col2a1b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
120557426
NCBI-ProteinID:
XP_039653675
LinkDB
All DBs
Position
4:22144371..22192386
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AA seq
1491 aa
AA seq
DB search
MFSFMDSRTVLLLVATQVCLLTVVRCQDEDDQEDVISCTQDGQRYSDKDVWKPEPCRICV
CDTGTVLCDEIVCEELKDCPKPEIPFGECCPICAADQSPPIGAPGAKGQKGEPGDITDVV
GPRGPSGPMGPPGEQGLRGARGDKGEKGSPGPRGRDGEPGTPGNPGPPGPPGPNGPPGLG
GNFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPTGSPGPQGFQGNPGEAGEPGQS
GPMGPRGPPGPSGKPGDDGEAGKPGKPGDRGPAGPQGARGFPGTPGLPGIKGHRGYPGLD
GAKGETGALGSKGESGAPGENGAPGPMGPRGLPGERGRPGPSGVAGARGNDGLPGPAGPP
GPVGTSGAPGFPGSPGSKGEAGPTGARGPEGAQGPRGESGTPGSPGPSGASGNPGTDGIP
GAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGTSGDPGIPGFKGEAGPKGEIGPP
GVQGAHGPQGEEGKRGPRGEAGAAGPLGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPA
GASGPKGANGDPGRPGESGLPGARGLTGRPGDAGPQGKVGPSGASGEDGRPGPPGPQGAR
GQPGVMGFPGPKGATGEPGKSGEKGLGGAPGLRGLPGKDGETGAAGPPGPAGSAGERGEQ
GQPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEGGAAGATGPRGERGFPGERGAAGPQGLQ
GPRGLPGTPGTDGPKGAIGPAGTGGAQGPPGLQGMPGERGASGIPGPKGDRGDLGEKGPE
GAPGKDGGRGLTGPIGPPGPGGPNGEKGESGPAGPSGAPGTRGAPGDRGETGPPGPAGFA
GPPGSDGQPGIKGEQGESGQKGDAGAPGPQGPSGAPGPAGPTGVFGPKGARGAQGPPGAT
GFPGAAGRVGPPGPNGNPGPAGPAGPSGKDGPKGVRGDGGPSGRQGDAGLRGAAGAPGEK
GDAGEDGPPGPLGPSGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGGSGDR
GPPGPVGPPGLTGPAGEPGREGNPGSDGPPGRDGATGIKGERGNTGPVGAPGAMGAPGAA
GPVGPTGKQGDRGESGAQGPSGPSGPAGARGMPGPQGPRGDKGEVGESGERGQKGHRGFT
GLQGLPGPPGQAGDQGATGPAGPSGQRGPPGPVGPAGKDGGNGLPGPIGPPGPRGRSGET
GPSGPPGNTGPPGPPGPPGPGIDMSAFAGLGQTEKSPDPLRYMRADQASGNLRQHDAEVD
ATLKSLNNQIENIRSPEGSKKNPARTCRDLKLCHPDWKSGEYWIDPNQGCTVDAIKVFCN
METGESCVRPKPASIPRKNWWSSKSKDRKHVWFGETMNGGFHFSYGDDSLAPNTAAIQMT
FLRLLSTEASQNLTYHCKNSVAYMDASAGNLKKAVLLQGSNDVEIRAEGNSRFTYSVMED
GCTKHTGQWGKTVIEYRSQKTSRLPIVDIAPMDIGGTDQEFGVEVGAVCFL
NT seq
4476 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttatggattccaggactgtactgctacttgtagcaacccaagtctgtcta
ttaactgttgtaagatgtcaagacgaggacgaccaggaggatgttattagctgtacacaa
gatggacagcgctatagtgacaaggacgtatggaaaccagagccttgtcgcatctgtgtg
tgtgacactggaaccgtcctgtgtgatgaaattgtctgcgaggagctaaaagactgccca
aaacctgaaatcccattcggagagtgttgccccatctgcgcagctgaccagtctccaccc
attggagcgcctggagctaagggtcagaaaggtgaacccggagacattaccgatgttgta
ggaccaagaggaccaagtggcccaatgggcccaccaggagagcaaggactccgcggagcg
agaggagataagggagagaagggaagccctggtccccgtggtagagatggtgagcccggc
acccccggaaaccccggcccccctggacctccaggacctaatggaccccctggccttggt
ggaaactttgctgctcagatggctggtggattcgacgagaaggctggcggcgcacagatg
ggtgtgatgcaaggaccaatgggccctatgggtcccagaggaccacctggccccaccgga
tcacctggcccacaaggtttccaaggcaacccaggagaggctggagagcccggacagtct
ggcccaatgggtccccgtggcccccctggaccttctggaaaacctggagatgatggtgag
gctggcaaacctggcaaaccaggagaccgtggacctgctggacctcagggagctcgtgga
ttcccaggaactcctggcctgcctggcatcaagggacacagaggttatccaggtcttgat
ggtgcaaagggagagactggagcgcttgggtctaagggtgagtctggtgctcctggagag
aatggcgctcctggacctatgggacctcgtggtttgcctggtgagagaggacgtcctgga
cccagtggagttgctggcgcacgtggaaatgatggcttgcccggtcctgctggtccccca
ggccctgtcggtacctctggagctccaggcttccctggctctcctggttcaaagggggaa
gctggtcctactggtgctcgtggacctgagggtgctcagggaccccgtggagagtcaggc
actcctggatcacccggaccttctggcgcttctggaaaccctggtactgatggtatccct
ggagccaaaggatcagctggtgctcctggtatcgctggtgctcctggtttccctggacct
cgtgggcctcccgggcctcaaggagcaactggacctctcgggcccaaaggaacatctgga
gacccaggtatcccaggattcaagggagaggctggacccaaaggagaaattggaccacct
ggtgttcagggagctcatggcccacaaggagaagaaggcaagagaggacccaggggtgag
gctggtgctgctggaccacttggacctcctggagagagaggagcccccggtaaccgtggt
ttccctggtcaagatggtctggctggtcccaagggagcccctggtgagcgtggacctgct
ggtgccagtggtcccaagggtgccaacggtgaccctggccgtcctggagagtctggtctg
cccggtgccagaggcctgactggacgccctggtgacgctggtcctcaaggcaaagttgga
ccttctggagcttctggtgaggacggtcgcccaggaccccccggcccacagggagcccgt
ggacagcctggtgtcatgggattccccggacccaagggagcaactggtgagcctggcaag
tcgggagagaaaggactgggtggagctcctggtctgagaggtctgcctggaaaagatgga
gaaactggagctgctggaccccccggccccgctggctctgctggagagagaggagagcaa
ggacagcctggtccctcaggtttccagggtctgcctggacctcccggcccccctggtgag
ggaggcaagcctggagaccagggtgttcctggagagggtggagctgctggtgctactgga
cccagaggagagcgtggtttccccggagagagaggagctgccggccctcagggtctgcag
ggaccccgaggtctgcctggaactcctggaactgacggacccaagggagccattggacct
gctggtactggtggagctcagggaccccccggcctgcagggtatgcccggagagagagga
gcttctggcattcctggacccaaaggagacagaggtgaccttggagagaaaggacctgaa
ggtgctcccggcaaagacggtggtagaggtctcactggtcccattggtccccctggtcct
ggtggccccaacggtgagaagggtgaatctggtcctgccggtccttctggtgctcctggt
acccgcggtgctcctggtgacaggggtgaaactggacctcctgggcctgctggatttgct
ggaccccctggttctgatggtcaaccaggaatcaagggagagcagggagaatctggacag
aagggtgacgctggtgcccctggaccccaaggaccctctggtgcccctggacctgcaggt
cctaccggtgtttttggacctaaaggtgctcgtggtgctcaaggacctcctggtgccact
ggtttccctggagctgccggccgagttggaccccctggtcccaatggtaatcctggacct
gctggtcctgccggcccttccggtaaagatggacccaagggtgtgaggggagatggtgga
ccctcaggcagacagggtgacgctgggctccgcggtgctgctggggctcctggagagaag
ggagatgctggagaggacggtccccctggtcccctcggtccttcaggtccccagggtttg
gctggtcagcgtggtatcgtgggtctgccaggacagcgtggtgagagaggtttccctggt
ctgcccggaccttctggtgagcccgggaagcagggagctcctggtggcagcggagaccgc
ggaccccctggacctgttggaccacctggactcactggacctgcaggagagcctggcaga
gagggcaatcctggatctgatggacctcctggtagagatggtgctactggaatcaagggt
gagcgtggtaacactggtcctgttggtgctcctggagccatgggcgcgcctggtgctgcc
ggcccagttggccccactggcaaacagggagaccgaggagagtctggtgcacaaggacct
tctggaccttcagggcctgctggagccagaggaatgcctggaccccaaggacctcgcggt
gacaagggtgaggttggagagtccggtgagcgaggacagaagggacacagaggcttcact
ggtctgcagggtctgcccggacctccgggtcaagctggagaccagggtgctactggacct
gctggaccttctggacaaagaggaccacctggacctgttggccctgctggaaaggatggt
ggaaacggtctgccaggacccattggaccccctggacctcgtggtcgcagtggagaaacc
ggtccctctggtccccccggaaacaccggaccccctggtcctcctggtccccctggccct
ggcatcgacatgtccgccttcgctggtctgggtcaaactgaaaagtcccctgatcctctc
aggtacatgagggccgaccaggcttctggaaacctccgtcagcacgatgctgaggtcgac
gccacgctcaaatctctcaacaaccagattgagaacatccgcagccccgagggatccaag
aaaaacccggctcgcacctgcagagacctgaagctctgccatcctgactggaagagcgga
gagtactggattgatcccaaccagggctgcaccgtcgatgcaatcaaggtcttctgcaac
atggagacaggagagtcctgcgtcagaccgaagcctgccagtatccctcgcaagaactgg
tggtccagcaagagcaaggaccgcaaacatgtctggttcggagagacgatgaatggaggt
ttccatttcagctatggtgatgacagcctggcacccaacacggctgccattcagatgact
ttcctgagactgctgtccaccgaagcttctcaaaacctcacctaccactgtaagaacagc
gtggcctacatggacgcctcagcgggcaacctgaagaaggctgtgctgctgcagggctcc
aacgacgtggagatcagagccgagggcaacagccgcttcacttacagcgtgatggaggac
ggctgcacgaaacacacgggacagtggggcaagacagtgatcgaatacagatcgcagaag
acctctcgtctgcccattgtagacattgcccccatggatattggaggaacagaccaggag
tttggagtcgaagtcggagcagtctgcttcttgtaa
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integrated database retrieval system
