Perca fluviatilis (European perch): 120557819
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Entry
120557819 CDS
T11622
Symbol
cstf1
Name
(RefSeq) cleavage stimulation factor subunit 1
KO
K14406
cleavage stimulation factor subunit 1
Organism
pflt Perca fluviatilis (European perch)
Pathway
pflt03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pflt00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120557819 (cstf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pflt03019
]
120557819 (cstf1)
Messenger RNA biogenesis [BR:
pflt03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
120557819 (cstf1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
Beta-prop_THOC3
Beta-prop_WDR3_1st
Beta-prop_IFT122_1st
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_WDHD1_1st
WDR55
Beta-prop_WDR3_2nd
Beta-prop_TEP1_2nd
CSTF1_dimer
WD40_Gbeta
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_2nd
EIF3I
Beta-prop_EML
ANAPC4_WD40
Beta-prop_WDR36-Utp21_1st
Beta-prop_RIG_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_NOL10_N
NBCH_WD40
WDR90_beta-prop_4th
Beta-prop_Aladin
ASA1
Beta-prop_SCAP
WD40_RFWD3
Beta-prop_VPS8
CFAP251_N
PAC11
Beta-prop_DCAF4
Beta-prop_IFT140_1st
Beta-prop_NWD2_C
Ge1_WD40
Beta-prop_NUP159_NUP214
DSE1_N
Beta-prop_HPS5
Beta-prop_SPT8
PROPPIN
DUF7099
Beta-prop_WDR11_1st
Frtz
Motif
Other DBs
NCBI-GeneID:
120557819
NCBI-ProteinID:
XP_039654385
LinkDB
All DBs
Position
4:complement(33993723..34013694)
Genome browser
AA seq
434 aa
AA seq
DB search
MHTMFRPKPTLKDRQHLYKLIISQLLYDGYTSIANSLINEVKPQNVVSPSEQLMQLAKTG
MENDDSAVQYAIGRSDTVAPGVGIDMEFDADVQTMSPEASEYETCYVTSHKGPCRVASYS
RDGQLIATGSADASIKILDTERMLAKSAMPIEVMMNETAQQNMENHPVIRTLYDHVDEVT
CLAFHPTEQILASGSRDYTLKLFDYSKPSAKRAFKYIQEAEMLRSISFHPSGDFLLVGTQ
HPTVRLYDANTFQCFVSCNPLDQHTDTISGVSYNPTANSYVTCSKDGSIKLWDGVSNRCV
STFEKAHDGAEVCSAIFSKNSKYILSSGKDSVVKLWEISTGRTLVKYTGAGLSGRQMHRT
QGVFNHTEDYVLLPDERTISLCCWDSRTAERKNLLSLGHNNIVRCIVHSPTNPGFMTCSD
DFRARFWYRRTTTD
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atgcacaccatgtttcgtcccaaaccaactttgaaagaccgacagcacctgtacaagctg
atcatcagccagctgctctatgacggatacaccagcatcgccaacagcctcatcaacgag
gtcaaaccacagaatgtagtgtcgccctctgagcagctgatgcagctggcaaaaacaggg
atggagaatgatgacagtgcagttcagtatgccattgggcgttcagatacagtggcacct
ggtgttggtattgatatggaatttgatgccgatgtccagaccatgtctccagaggcgtca
gagtatgagacctgctatgtaacatcccataagggtccgtgccgtgtcgcttcatacagt
cgggatggccagctgattgccactggctctgccgacgcttccatcaagatcctggatact
gaacgcatgctggccaagagtgctatgcctattgaggtgatgatgaatgagacagcgcag
caaaacatggagaatcaccctgtgatccgaacactgtatgaccacgtggacgaagtcacc
tgcctcgccttccatccgactgaacagattctagcttctggctccagagattacacgctc
aaactgtttgactactctaagccctctgcaaaaagagcatttaaatatatacaggaagca
gagatgctgcgttcaatctccttccacccatcgggggactttctgctggtgggaacgcag
caccccaccgtccgcctctacgacgccaacacctttcagtgctttgtgtcctgcaacccg
ctggaccagcacacagacaccatcagcggggtcagctacaaccccaccgccaacagctac
gtcacctgcagcaaggacggcagcatcaagctttgggatggcgtctccaaccgctgcgtg
tccaccttcgaaaaggcccacgacggagccgaggtctgctccgccatcttctccaagaac
tccaagtacatcctgtccagtggcaaagactccgtggtcaaactgtgggagatctctacc
ggtcggacactggtcaagtacacaggcgcggggctgagtggccgtcagatgcatcggaca
cagggtgtgttcaaccacaccgaggactatgtgctgctgccagatgagcgcaccatcagc
ctgtgctgctgggactcgcgcacggccgagaggaaaaacctgctgtctctgggacacaac
aacattgtgcgctgcatcgtccactcgcccaccaatcccggcttcatgacctgcagcgac
gacttcagggcccgcttctggtaccgccgtaccaccacagactga
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