Perca fluviatilis (European perch): 120562038
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Entry
120562038 CDS
T11622
Symbol
parn
Name
(RefSeq) poly(A)-specific ribonuclease PARN
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
pflt Perca fluviatilis (European perch)
Pathway
pflt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pflt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120562038 (parn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pflt03019
]
120562038 (parn)
Enzymes [BR:
pflt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
120562038 (parn)
Messenger RNA biogenesis [BR:
pflt03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
120562038 (parn)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
RRM_R3HCC1L
R3H
RRM_Thc1
Motif
Other DBs
NCBI-GeneID:
120562038
NCBI-ProteinID:
XP_039661399
LinkDB
All DBs
Position
1:complement(14242155..14252847)
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AA seq
674 aa
AA seq
DB search
MEVTRQNYKDSLNTVYSAIEEADFLAIDGEFSGISDGPNVSALTNGLDTPEERYTKLKKH
SMDFLLFQFGLCTFTYDQTKSKYITKSFNFYVFPKPFNRTSPDLKFICQSSSIDFLASQG
FDFNKVFCHGIPYLNQEEEAQLREQTEERRNQHANGVGTPSYSSPSSKGPAHVPEEHKDY
INRVIEKVEALFTNSEKTLDLDPCTGFQRKLIYQTLNWKFPKGLHVETVETEKKERYIQV
SKVDDEERKRREQQKQEREQEELNDAVGFSRVIHAISKSAKLVVGHNMLLDVMHTIHQFY
CPLPEDLQDFKEITMCVFPRILDTKLMASTQPFKELITNTSLAELEKQLKESPFKSPQVE
TAEGFPGYDTAQGQLHEAGYDAYITGLCFISMANYLGSFLTPPKAYISAHSKLIEPFFNK
LFLMRIIDIPYLNITGPDLQPKRDHVLYVTFPKEWKTSDLYQLFSAFGNIQVSWIDDTSA
FVSLSQTDQVQIAMNTSRYAESYRIQTYAEYIQGKQQDKEKLNQTPKSWGEDGWMKPPYT
SATCAGFGYARGLRKRSISPTQGEQGAGDAPITDGWSQCSYPNSTGSKKMKTDDKSGLAI
ESRTSEGWLKTADASDSAGSSPVPDEEERSPEGNDAEGTVTWQQVHGKRGQKNKKKKSKG
AKSTTSLFEVPEVW
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atggaggtgacacgccaaaattataaagacagtttaaacacggtgtacagcgcgatagag
gaggctgacttccttgccatcgatggagaattttcagggataagcgacggtcctaatgtc
agtgcactcaccaacggactggacacaccggaggagcgatacacgaagcttaaaaagcac
tcaatggactttctgctgttccagttcggattatgtacattcacgtacgaccagacaaag
tcaaagtatatcacaaagtcttttaatttttatgtattcccgaaaccgttcaacaggaca
tcccccgacttaaagttcatctgtcaaagttccagtatcgacttcctggccagtcaggga
ttcgacttcaacaaggtgttctgtcatggaatcccatatctaaaccaagaagaggaagcc
cagctgagggagcagaccgaggagaggagaaatcaacatgctaacggtgtagggacacca
tcctacagctccccctcctccaaaggccctgcacacgtacctgaggagcataaagactac
atcaacagggtgatagagaaggttgaggccctcttcactaactcagagaagactttggac
ttggacccatgtactgggtttcagagaaagctgatctaccagacactgaactggaagttt
cccaaggggcttcatgtggaaactgtggaaacagaaaagaaggagcgatacatccaggtc
agcaaagtggatgatgaggagaggaagaggagggaacaacagaaacaagagagagagcag
gaggagctaaatgatgctgttggcttctccagggtcatccacgccatctctaaatctgct
aaacttgtggttggtcacaacatgctgttggatgtaatgcacacaatccaccagttctac
tgccctctgccagaggatcttcaagactttaaagagatcacaatgtgtgtcttcccaaga
attctggacacaaagttgatggcttccactcagccctttaaggagctgatcactaacaca
tctctggcagagttggagaaacagctgaaggagagccccttcaagtcaccacaagttgaa
actgcagaggggttccccggttatgacacagcccagggacagctccatgaggctgggtac
gatgcctacatcactggcctctgtttcatctcaatggccaactacctgggctctttcttg
actccacccaaagcgtacatctctgctcactccaaactaattgagcctttcttcaacaag
cttttcctgatgaggataatagatattccctacctcaacatcacaggaccagatttgcaa
cctaaaagagaccatgtcctgtatgtcaccttcccaaaagaatggaagactagtgacctc
taccagctctttagtgccttcggaaacatccaggtttcctggatagacgacacgtcagca
tttgtgtccctaagtcagacggaccaggtacagatagctatgaacaccagccgctacgca
gagagttacaggatccagacgtatgcagagtacatccagggtaagcagcaggacaaggag
aagctcaaccagacgcccaaatcttggggagaggacggctggatgaaacctccctacacc
tccgctacttgtgctggttttggatatgccaggggtttgaggaaacgcagcatcagtccc
actcagggagagcaaggggccggagacgctccaattacagacggctggagtcagtgctca
tacccgaatagcacaggcagcaagaagatgaaaactgatgacaaaagtggactagctatc
gagagcaggacctcagaaggatggctaaagactgcagatgcatcagattcagcggggtcc
agtccagtccctgatgaggaggagcgaagtcctgaaggcaatgatgctgaggggacggtc
acctggcaacaagtccatgggaagagaggtcaaaagaacaagaaaaagaagtccaaaggg
gctaaatctacaacgtcgctgtttgaggtcccggaagtctggtag
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