Perca fluviatilis (European perch): 120568842
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Entry
120568842 CDS
T11622
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(XI) chain-like
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
pflt Perca fluviatilis (European perch)
Pathway
pflt04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pflt00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
120568842
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pflt00536
]
120568842
Glycosaminoglycan binding proteins [BR:
pflt00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120568842
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_1
Laminin_G_3
ConA_2nd_BAM2
Motif
Other DBs
NCBI-GeneID:
120568842
NCBI-ProteinID:
XP_039672499
LinkDB
All DBs
Position
11:complement(17183162..17275789)
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AA seq
1840 aa
AA seq
DB search
MEMQRWTTRWKTKRWLWDSTLVAVVTLSLILQAANVRAAEPVDVLKALDFQSSPEGVQKT
TGFCTVRRGSKPNIAYRVGKQAQISAPTKQLFPGGDFPEDFSILFTIKPKAGLQSFLLSI
YNQQGIQQLGVEVGRAPVFLYEDQHGKPAPEGYPLFRSINLADGKWHRVAISVEKKSVTI
IVDCKKKVTRPLGRSDQAVINTEGITVFGTRILDEEVFEGDIQQLLIVADPRAAYDYCEH
YSPDCETPNHHDTPQAQQPEDEYTNYEYGEYGDYNEGELTTDAPPTEGAKTETNVGGDYY
TGEYDYTTVDESIFFFFFLFVPWNPPPPPSNTLDXSQSYEGEIVDDYITGVEQVGVDPTV
AVETAAPVDTLEKVDPATDVYEFKEYDLKEYDNKEIVEKPYEYGDYGDYGPTEAKPTSAT
YEDEFGPGVPAETDIRESNVGGGQSYLGEKGEKGEPAVIEPGMLIEGPQGAPGQAGLPGT
PGLQGPPGPHGDHGERGPPGRPGLPGSDGIPGPPGTILMLPFRAGGESHKGPVVSAQEAQ
AQAILAQARLTMRGPPGPVGMAGRSGPVGGPGAPGLKGDSGDSGPQGPRGLQGATGPPGK
AGKRGRNGADGARGMPGEAGTKGDRGFDGLPGLPGEKGHRGEHGSTGPPGPPGEDGPRGE
DGQVGQRGVAGDSGPRGLLGPRGSPGTGGQRGLPGIDGQAGPKGNMGPQGEPGPPGQQGM
PGPHGLVGPQGPIGPPGEKGPQGKQGLAGLSGADGPPGHPGKEGPPGEKGAAGLAGPMGS
IGYPGPRGVKGAEGIRGLKGGKGEKGEDGFPGFKGDMGLKGDKGEGGVLGPRGEDGPEGP
KGKSGPNGEAGPLGLAGEKGKLGVPGLPGYPGRQGSKGSNGFPGFPGANGEKGARGIAGK
AGPRGQRGPTGPRGGRGARGPTGAPGAKGTSGNDGPGGPPGERGPQGPQGPVGFPGPKGP
NGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPSGERGHPGSPGPPGE
QGLPGAAGKEGGKGDPGSQGPSGKAGPAGLRGFQGARGLPGAMGPAGLKGGEGPQGPPGP
IGSPGERGAAGPGGPIGLAGRNGPQGPPGPAGEKGGPGEKGPMGPAGRDGIQGPVGLPGP
AGPQGPPGEDGDKGEVGGPGQKGSKGDKGELGPPGPSGLQGVVGAPGPAGSDGESGPRGQ
QGMFGQKGDEGARGFPGLPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGSSGA
NGAQGPPGGIGAMGGVGEKGETGEAGNPGSVGEPGIAGPRGETGEKGETGPPGAAGPAGP
RGPSGDDGPKGNPGPVGFPGDPGPPGEPGAAGLDGLPGDKGDDGEAGQPGPSGPSGEAGV
PGPPGKRGTVGPAGQEGRQGEKGSKGEAGAEGPVGKTGPVGPQGTAGKSGPEGLRGIPGP
VGEQGLPGASGQDGPPGPMGPPGLLGMKGDSGGKGEKGHPGLIGLIGPPGESGEKGDRGL
PGPQGTAGGKGDAGGTGPQGPLGPPGPPGLSGPLGQKGSKGSTGSAGQKGDTGLIGPPGP
PGPPGDIIQPLPIQQAAKRTRRQAEKQGDKALADKALADYGVDGLGMEGMEDVFGSLNNL
KQDIERMKFPMGTQDNPARTCNDLHLSQPDYPDGEYWIDPNQGCIGDSIKVFCNFTAGGE
TCIFPDKKSVGVRISNWPKESPGSWFSEFKRGKILSYVDMAENTINTVQMTFLKLLSSSA
RQNFTYICHQSVAWYDAKADNYDKALRFLGSNDEEMSYDNNPFIKPLMDNCSLKQGYSKT
VMEINTPRIDQLPIIDVMLNDFGESNQRFGFEVGPVCFLG
NT seq
5523 nt
NT seq
+upstream
nt +downstream
nt
atggagatgcaaaggtggaccaccaggtggaaaacgaaaaggtggctatgggattcaacg
ctagtcgctgtggtcacattaagtttaattctacaagctgccaatgtcagagcagctgaa
ccagtagatgtactaaaggctctagacttccagagctctcctgaaggagtacagaaaaca
acaggcttctgcacagtccggagaggatccaaacccaacatcgcttacagagtgggaaaa
caggctcagatcagcgctccaaccaaacagctcttcccaggaggagatttcccagaagat
ttctccatcctgttcaccatcaagcccaaggctggcctccagtccttcctactgtccata
tacaaccagcaaggcatccagcagcttggcgtagaggtgggccgtgcccccgtcttcctg
tatgaggaccagcatggcaagcctgccccggaggggtaccccctgttccgctccatcaac
cttgctgacggcaaatggcatcgtgtagctatcagcgtagagaagaagagtgtcaccatc
atcgtggactgtaagaagaaggtgaccaggccccttggcagaagcgaccaggccgtcatc
aacacagaaggcataactgtctttggcaccagaatcttggatgaggaagtctttgagggt
gacatccagcaactgctgatagtggcagaccccagggcagcctatgactactgtgaacac
tacagccctgactgtgaaacccccaaccaccacgacaccccccaggctcagcaacctgag
gacgagtacactaactatgaatatggtgaatatggtgactacaatgaaggagagttaacc
actgatgctcccccaactgaaggagccaagactgagacaaatgtgggtggagactactac
acgggtgagtatgactacaccacagtggacgaatcgattttttttttttttttcctattt
gtaccatggaacccccccccaccccccagcaacaccctggattgatcccagagctatgaa
ggggaaatagtggatgattacatcaccggtgtggaacaggtcggggtggaccccaccgtt
gctgtggaaaccgctgccccagtggacaccctagagaaggtggatcctgccacagacgtg
tatgagtttaaggaatacgacctaaaggaatatgacaacaaagagattgtagagaagcca
tacgaatatggtgattatggcgattatggccccactgaagccaagcctacatctgcaaca
tatgaggacgagtttggtcctggagttccagcagagacggacatccgagaaagcaatgtg
ggtggaggtcaaagctacctgggagaaaaaggagagaagggtgaacctgctgtcattgag
ccagggatgcttatagaaggaccccaaggagcccccggccaagccggtcttcctggtacc
ccaggattacagggtcctccaggtccccacggagatcacggtgagaggggtcctccaggg
cgtcctggtcttcctggttcagacggtattcctgggcctccaggtaccattctgatgctt
ccattccgtgcgggcggtgagtcacacaagggacctgtggtttcagctcaagaagctcag
gctcaggccatccttgctcaggctaggctgaccatgagaggtcctccagggccagtgggc
atggcaggaagatctggtcctgtgggaggtcctggagctcctggacttaaaggtgacagt
ggtgactccggaccacagggacccagaggtcttcagggtgcaactggtccaccagggaaa
gcaggaaagaggggtcgtaatggagccgatggtgctcgaggaatgccaggagaggcaggg
accaagggtgacagaggttttgacggcctccctggtcttcctggagaaaaagggcataga
ggagaacatggttctacaggacctccaggacctccaggagaggatggccccagaggtgaa
gatggccaggttggacagagaggtgtggctggagacagtggtcctcgaggtttgcttggc
cccagagggtctccaggtactggtggacagcgtggtcttcctggaattgatgggcaagct
ggtcccaaaggaaacatgggtccacaaggagagccgggacctcctgggcaacagggtatg
cctggtccacatggtcttgttggtcctcaaggtccaatcgggcctcctggtgaaaaagga
cctcaagggaaacaaggtttggctggcctttctggtgctgatggccctcctggtcaccca
ggaaaagaaggtcctccaggcgagaaaggagcagctggtcttgctggtcctatgggatcc
attggctaccctggacctcgtggtgtgaaaggtgctgagggaattagaggccttaaaggt
ggcaaaggagaaaagggagaggatggattccctggcttcaaaggtgacatgggtctcaag
ggtgacaagggtgagggtggtgtattaggacccagaggagaagacggtcccgagggtccc
aagggcaagtcaggacccaatggagaagctggtcccttgggactagctggagagaaggga
aaacttggagtccctggattgcctgggtaccctggtcgacaaggctccaagggctccaat
ggcttccctggattccccggggcgaatggcgagaagggagcaaggggaatcgctggcaaa
gcaggccctagaggtcaacgtggcccaacgggtccacgtggtgggcgtggtgctagagga
ccaacaggagcgccaggtgcaaagggcacctcaggcaacgatggaccagggggcccacca
ggagagaggggacctcaaggaccacagggacccgtcggtttccccggacctaaaggaccc
aatggccccccaggaaaagatgggctgcctggtcatcctggacagagaggagagacgggc
ttccaaggaaagacaggacctccaggacctggaggggtggttggaccacagggcccaact
ggagagacaggacctagcggagagcgaggacacccaggttcgcctggtccacctggtgag
caaggtctacctggagctgctggaaaagagggtggaaagggtgatccaggttctcagggt
cctagtggcaaggcaggacctgccggcctacggggcttccagggtgcaagaggtcttcca
ggggccatgggtccagctggcttaaagggaggagaagggcctcagggtccccccggcccc
atcggttctcctggagagagaggtgctgctggccctggaggtcccattggtctagcagga
cgcaatggaccccaaggaccacccggccctgctggagaaaagggcggccctggagagaaa
ggtcccatgggccctgctggccgtgatggcattcaaggtcctgttggtcttcctggtccg
gctggtcctcagggtccccctggagaggacggtgacaagggagaagttggcggacctgga
cagaagggaagcaaaggagacaagggtgaacttggtccaccaggcccaagcggtcttcag
ggtgtggtcggagctcccggtccagctggcagtgatggtgagtctggaccgagaggacag
cagggtatgtttggccagaaaggagacgaaggagccagaggattccccggtctaccagga
cccatcggactacagggtttgcccggccctcctggtgagaagggagagaatggagatgtt
ggaccaatgggtccacctggtcctcctggccccagaggtcctcagggttccagcggtgcc
aacggagctcaaggtcctcccggtggtattggtgcaatgggaggtgttggtgagaaggga
gaaaccggtgaagctggcaacccaggatcagttggagagcctgggattgcaggacccaga
ggagagactggtgagaagggagaaaccgggccacccggagctgctggacccgccggcccc
cgtggaccctctggagatgacggtcccaagggcaaccccggtcctgtcggcttcccagga
gaccctggtccccctggtgagcctggtgctgctggtcttgacggtttaccaggtgacaaa
ggagacgatggagaggccggacaaccaggcccttcaggtccatctggtgaggctggagta
ccaggacctcctggcaaaaggggaactgttggaccagcaggtcaggagggcagacaagga
gaaaagggatccaagggcgaagctggagccgagggccctgttgggaaaactggacctgtg
ggacctcaggggactgctggaaagtctggtcccgagggactgcgtggaattcctggccct
gttggtgagcaaggactgcctggtgcttctggtcaagatggcccaccaggacctatggga
ccccctggacttcttggtatgaaaggtgactctggaggaaagggagagaagggtcatcca
ggtcttatcggtctgattggtcctcctggtgagtctggagagaagggagacagaggattg
cctggacctcagggtactgcaggtggcaagggtgatgctggtggtactggtccccaaggt
cctctcggtcctcctggtccccctggtctttctggccctctaggacagaagggttccaag
ggatcaaccggttcagcaggtcagaagggagacactggactgattggaccacctggacca
cctggtccacccggtgacatcatccagccactgcccatccagcaggctgccaaaaggacc
agacggcaagctgagaagcagggagacaaggcattggcagacaaggcattggcagactat
ggcgtagatggcctcggtatggagggaatggaggatgtctttggatccctcaacaacctc
aaacaggacattgaacgcatgaagtttcccatgggcacccaagacaatcctgccaggacc
tgcaacgacctgcacctcagccagcctgactacccagatggtgaatactggattgatcca
aaccagggctgcataggagactccatcaaagtgttctgtaacttcacagcaggcggagaa
acgtgtatcttcccagataagaaatctgtaggagttagaatatccaactggcccaaggag
tctccaggttcatggttcagtgaatttaaacgtggcaaaattttgagctacgttgacatg
gcagaaaacaccatcaacacagtgcagatgaccttcctgaagctgctgagctcctcagca
cggcagaacttcacctacatttgccatcagtccgtggcctggtacgatgccaaggccgac
aactacgacaaggcgctgcgcttcctgggctccaacgatgaggagatgtcttacgacaat
aatcccttcatcaagccgctgatggacaactgctcgctgaagcagggctattcaaagact
gtgatggagatcaacactccccgcatcgaccagttgcccatcattgacgtcatgctgaat
gactttggggaatccaaccagaggtttggctttgaggtgggccctgtctgtttcctcggc
tag
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