Perca fluviatilis (European perch): 120571176
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Entry
120571176 CDS
T11622
Symbol
skiv2l
Name
(RefSeq) LOW QUALITY PROTEIN: helicase SKI2W
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
pflt Perca fluviatilis (European perch)
Pathway
pflt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pflt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120571176 (skiv2l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pflt03019
]
120571176 (skiv2l)
Enzymes [BR:
pflt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120571176 (skiv2l)
Messenger RNA biogenesis [BR:
pflt03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
120571176 (skiv2l)
mRNA degradation factors
3'-5' decay
Ski complex
120571176 (skiv2l)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
MTR4_beta-barrel
DEAD
DEXQc_Suv3
ResIII
Helicase_C
MTR4-like_stalk
DUF3516
HTH_23
Motif
Other DBs
NCBI-GeneID:
120571176
NCBI-ProteinID:
XP_039675855
LinkDB
All DBs
Position
13:complement(23174932..23189864)
Genome browser
AA seq
1258 aa
AA seq
DB search
MLGSGNMDRINVPPAGPMDLPLSLLEMGCSGRFELITHPIPNQPLPPQSTLPHGLPPISL
SLETEVEKQFLRDAAWLPIHDTDFAFQKFLKVTQREVNVDSLINCTPSSLHSDVSVVRDP
TTGMLLDFTEVLLENTSLSAKNSLSLQRQPGPPSESLRGSNTNYPFLPGGMEELTLDQIQ
KKSELEEDIDFENDLLRIPPGLKAGMDFTDKDAKIAKAEVNLMSLLSTLNDITYLQPEAE
EKEEGKGSKEAPKLPRTNSLEDLGIKDVVSSSTPSDKGKDDKSKPKGNLEENKKWAIPVN
ITSPCDDFYKRIPNPAFKWPFELDVFQKQAVLRLEAHDSVFVAAHTSAGKTVVAEYAIAL
SQKHMTRTIYTSPIKALSNQKFRDFKNTFGDVGLLTGDVQLSPESSCLIMTTEILRSMLY
NGSEVIRDLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFSDWIG
RIKKKHIYVISTMKRPVPLEHYLYTGNSTKTQKEMFLLMDATGNFLTKGYYAAVDAKKER
TSKHAQSFGTKSTSHNTSASQDRSVWLTLLHFLSQRQQTPVVAFTFSRTRCDDNARSLDS
MDMTTSIEKAEIHSFFQKSLSRLRGGDRQLPQILVMRDLLKRGIAVHHSGILPILKEVIE
IFFFLNLRXISRMCVSVLFATETFAMGVNMPARTVVFDSIRKHDGTGFRNLLPGEYIQMA
GRAGRRGLDPTGTVIILCKAGVQEMSDLRVMMLGKPTTLQSQFRLTYTMILNLLRVEALR
VTDMMRRSFSESHRDTQAHEKRISQLKKMVSSLPPLDTEGQLSDMLPYYHTVTELRTTTE
ALQRAILESVNGLKALSVGRVVVVNNEQHLNALGVILQVSSDSVNRTFTALVICEKGNEE
GEGKENNNTFPHFYNTALFIPEGPCSHTVQKLKLQDISAITVKTLKVIPDRIIDNYKKRQ
QPRFRLDPPGQAISTATQELLRLAEANPSGIATLDPVNDLQLKSVDVVEDSMRVRVLQDI
LREFNCIHSPTFAEQFARVKERMSVQEELDRLLFLVSDQSLSLLPEYHQRIKVLQSLQYV
DSSGAVQLKGRVACQISSHELLLTELLFENVLSPLAPEDSAALLSCLVFTQNTQVEPHIT
NTLKEGIDRVLSVAKRIGELQRDCGIPQTAEEFVGQFKFGLTEVVYCWARGMPFAEIAQL
TDVQEGTVVRCIQRLDEVLKEVRQAARIVGDSVLGSKMEKASLAIRRDIVFTASLYTH
NT seq
3777 nt
NT seq
+upstream
nt +downstream
nt
atgcttgggagtgggaacatggacagaataaatgttccccccgcgggccccatggacctg
ccgctgtccctgctggagatgggatgctctggcaggtttgagctcatcacacaccccata
cctaaccagcctttacccccacagagcacactccctcatgggcttcctcccatcagcctt
agcctggagacagaagtagagaaacaatttttacgggacgcggcctggcttcccattcac
gacacagactttgccttccagaagtttctcaaggtgactcagagagaagttaatgttgat
tctctaatcaactgtactccatcttcacttcactccgatgtctctgttgtcagagatcca
accacagggatgctgctggacttcacagaggtgttactggagaacacaagcctgtcagca
aagaactcactttcattacaacgccaaccggggcctccttcagagagccttcgaggaagc
aataccaactaccccttcctccccggaggaatggaggagcttactctggaccaaatacag
aagaaatctgagctggaggaggacatagactttgagaatgatttactcagaatcccacct
ggacttaaagcggggatggacttcactgacaaagatgccaagattgcaaaggcagaggtc
aacctcatgtccctcctgtccacattgaatgacatcacttacttgcaacctgaggcagag
gagaaagaggaaggcaaaggaagtaaagaagctcccaaactacccagaacaaacagcctt
gaagacctgggcatcaaggatgttgtgtcatcctcgactccctcagataaaggaaaagat
gacaaatcaaagccaaaagggaacttggaggaaaataagaaatgggctatccctgtcaac
attacttcaccctgcgatgatttctataaacgcatccccaacccagctttcaagtggccg
tttgagctggatgtcttccagaaacaggctgtgctgagactggaggctcacgactctgtg
tttgtagccgcacacacatcagctggcaaaacagtagtggccgaatacgccatcgctctc
tcacagaaacacatgacaaggaccatctacacctctcccatcaaagccctgtccaatcag
aagttcagagactttaaaaacacctttggagatgttggacttctgacgggcgacgtgcag
cttagtcctgaatcttcgtgcctcatcatgaccactgagatcctccggtccatgctttac
aacggatcagaggtcatcagagacttggagtgggtgatctttgacgaggttcactacatc
aacgatgctgagagaggggttgtatgggaggaggttttgattatgctccccgatcacgtc
agtatcattctccttagcgccacagttccaaatgctctggagtttagcgactggatcggt
cgtataaagaagaagcatatttacgtgatcagcacaatgaagagacctgtgcctttggag
cattatctgtacactggaaacagcaccaagactcagaaagagatgttcctgctgatggat
gctacaggaaacttcctcactaaagggtactacgcagccgtcgatgccaaaaaggagcgc
accagcaaacatgcccaatcatttggcacgaagagtacttctcacaacacctcagctagt
caggaccgatcggtgtggctcactctcctgcactttctgtcccagcggcagcagacgccg
gtggttgcgttcacgttctctcggacacggtgtgacgacaacgcccgctcgctggactcc
atggacatgaccacctccatagagaaggctgagatccactctttcttccagaagagcctg
agtcgcctccgaggaggagaccgacagctgcctcagatcttggtcatgagggacctgttg
aagaggggaatagcagtccatcacagcgggatcctgccgattctaaaggaagtcattgag
atctttttttttctaaatctacggtgaatcagtcggatgtgtgtgagtgtgctgtttgcc
acagagacatttgcaatgggagtaaacatgcctgccaggactgtggtgttcgacagcatc
aggaaacatgacgggaccggctttagaaatctgctgccaggtgagtatattcagatggcg
ggcagagcaggcaggagaggtctggaccccacaggcactgtcatcattctgtgtaaagcc
ggagttcaggagatgtcagatctgcgtgtgatgatgctgggtaaacccaccacactccag
tcccagttcagactgacctatacgatgatccttaatcttctgcgagtcgaagccctccgc
gtgaccgacatgatgaggaggagcttttctgaaagccacagggacactcaggcccatgag
aagaggatcagccagctgaagaagatggtgtcttctctgcctcctctggacacagaaggc
cagctgtccgacatgttgccctactaccacaccgtgacggagctacggaccaccactgag
gccctccagcgcgctattctggagtctgtcaacgggctgaaagctctgtctgtgggtcga
gttgtggtggtgaacaacgagcagcatcttaacgccctgggagttatcctacaggtgtcc
agtgactctgtaaatcgcaccttcacagctctcgtcatctgtgagaagggcaacgaggaa
ggggaaggaaaagaaaacaacaacacattccctcacttctacaacacagctctctttata
cctgaaggcccttgcagccacacagtgcagaagttgaagcttcaggatatctcagccatc
acagtaaaaaccctcaaagtgattccagacaggatcatcgacaactacaaaaagaggcaa
cagccgcgattcaggcttgaccctcccggccaagccatctccacggcaacccaggagctc
ctgcgattggccgaggccaaccccagcggcatagcgaccctcgaccccgtgaacgacctc
cagttgaagagcgtcgatgtggtggaggactccatgagagtccgtgtgctgcaagacatc
ctccgagagttcaactgcatccactcgcccaccttcgcagagcagtttgctcgtgttaag
gagaggatgagtgtgcaggaggagctggaccggctgcttttcctggtgtcggaccagtct
ctgtctctcctgcctgaataccaccagaggatcaaggtgctgcagtccctccagtacgtc
gacagcagcggggcggtgcagctgaaaggccgcgtagcctgtcagatcagcagccacgag
ctgctgctgaccgagctgctgttcgagaacgtcctgagcccgctggcgcccgaggatagc
gccgctctgctgtcctgtttggtcttcacacagaacacacaggtggagccgcacattacc
aacacactaaaggagggcatcgatcgggtgctgtcagtggccaagcgtatcggagagctg
cagagggattgtgggataccacagacagctgaggagtttgttggccagttcaagtttggc
ctgacagaggtggtgtactgctgggccagaggcatgccgttcgcagagatcgcccagctg
acggacgtccaggagggcacagtggtccgctgcatccagcgcctggacgaggtgctgaag
gaggtgcgacaggccgcacgcattgtgggagactccgtcctggggagcaagatggagaaa
gcctccttggccatccgcagggacatcgtcttcaccgcctccctctacacccactga
DBGET
integrated database retrieval system
