Perca fluviatilis (European perch): 120574565
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Entry
120574565 CDS
T11622
Symbol
ddx42
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
pflt
Perca fluviatilis (European perch)
Pathway
pflt03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pflt00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120574565 (ddx42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pflt03041
]
120574565 (ddx42)
Enzymes [BR:
pflt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120574565 (ddx42)
Spliceosome [BR:
pflt03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
120574565 (ddx42)
Complex B
120574565 (ddx42)
Complex C
U2 SnRNP specific factors
120574565 (ddx42)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
120574565
NCBI-ProteinID:
XP_039680905
LinkDB
All DBs
Position
15:21513321..21523540
Genome browser
AA seq
927 aa
AA seq
DB search
MNWNKGGPGVKRGFGFGGFSLAGRKEEPSLPQKSHTTFGGPPGSSGYGRGQQLPSFYKIG
TKRANFDEENAYFEDDEEESSSNVDLPYIPAENSPTRQQMQSGGGSDSEDDPLDAFMAEV
EDQAAKDMRKLEEKEKEKKSAKGIRDDIEEEDEQEAYFRYMAENPTAGLTLEEEDENIDY
DSDGNPIASTTKKIILPLPPIDHSEIDYPPFEKNFYNEHEEVSNLTGTQVLELRHKLNLR
VSGAAPPKPCTSFAHFNFDEQLMHQIRKSEYTQPTPIQCQGVPIALSGRDMIGIAKTGSG
KTAAFIWPMLVHIMDQKELEAGEGPIAIIVCPTRELCQQIHAECKRFGKAYSLRSVAVYG
GGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATSLQRVSYLVFDEADRMFDMGFEYQVR
SVASHVRPDRQTLLFSATFRKKIERLARDILVDPIRVVQGDIGEANEDVTQMVEMLPSST
DKWGWLTRRLVEFTSSGSVLIFVTKKANCEELATNLTQEGYSLGLLHGDMDQSERNKVIS
DFKKQNLPVLVATDVAARGLDIPSIRTVVNYDVARDIDTHTHRIGRTGRAGEKGVAYTLL
TNKDTTFAGDLVRNLEGANQAVSKELMDLAMQNPWFRKSRFKGGKGKKMNIGGGGLGYRE
RPGLGAESSERSSSSSSSLLSSTSSFEGYSKPPTGAMGDRMSAMKQAFQAQYKSHFVAAS
SGPPKLTTKSNSSSCWTSAGSLSSVPTESPNSSERSQSAALSMSGFTSAGSLSSVPTSQT
SSQPSYPPPAPPPQRDIPRDRHGEDRGRHDSYHRHSDRSDRHSGEDRYGDRDRHGDGDQD
RHGDGDRDRYGDRDRDRHGDRDRYSSSSSSSSRHSDSRNGDASKRDRDDRRSERDGGDRG
NGEGRDRGDDSFAVPEPPKRRKSRWDN
NT seq
2784 nt
NT seq
+upstream
nt +downstream
nt
atgaactggaacaaaggtggtccgggtgtgaagcgagggtttgggtttggaggtttttcc
cttgcagggcgaaaagaagaacccagccttcctcagaaatctcacacaacatttggagga
cctccaggatcaagtggatatgggaggggccagcagctcccatcgttctacaaaataggg
acaaaaagagctaattttgatgaggaaaatgcgtattttgaagatgatgaggaggaatcc
agcagcaatgtggatctgccgtacatcccagctgagaactcacccacacggcagcagatg
cagtctggtggggggtcagacagtgaagatgacccactggatgccttcatggcagaggtt
gaggaccaagcagctaaagacatgaggaaactggaggaaaaggaaaaggagaaaaagtca
gccaagggtattcgtgatgacattgaagaagaagatgaacaagaagcctactttcgctac
atggcagagaatcccacagccgggctgaccctggaggaagaggatgaaaacattgactat
gacagtgatggtaacccaatcgcctcgactaccaagaaaataatcttgccgcttcctccc
attgaccactccgagattgattacccaccctttgagaaaaacttctacaatgagcatgaa
gaggtcagcaacctgactggtacccaagtgttagagttaaggcacaaattgaacctaagg
gtatctggtgctgcccctccaaaaccttgcactagctttgcccacttcaactttgatgag
caactaatgcaccaaatccgcaagtctgagtacactcagcccacaccaattcagtgccag
ggtgtgcccatagctctgtctggacgtgacatgattggtattgcaaaaactggcagtggc
aaaactgcagcttttatctggcccatgctggttcacatcatggaccaaaaggaactggag
gcaggagaagggcccatcgccatcattgtgtgtcccaccagagagctttgtcagcagatc
catgcagaatgtaagcgttttgggaaagcctactctttgcgttctgtggcggtttatgga
ggaggcagcatgtgggagcaggccaaagctctgcaggagggagctgagattgtggtgtgc
actccgggtcgtctgattgaccacgttaaaaagaaggccacgtccctgcagcgagtgtca
tacctggtgtttgatgaggcagatcgcatgtttgatatgggctttgaatatcaggttaga
tctgttgctagccatgtccgcccagacagacagacccttctgtttagcgctactttccga
aagaagatagagagactggccagagacatcttggtagatcctattcgtgtggtgcaggga
gacatcggagaggccaatgaggatgtcacccaaatggtggagatgctgcccagctcgaca
gataaatggggctggctgactcggcggctggtcgagttcacctcctctggctcagttctt
atcttcgttaccaagaaggcaaactgtgaggaactggctactaatctgacccaggagggc
tacagcctgggccttctacacggagacatggaccagagtgagaggaacaaggtcatcagc
gacttcaagaaacagaatttgcctgttctggtggccactgatgtagctgctcgtggtctg
gacatcccatccattcgtacagtggtgaactacgacgtggcacgagacatcgacacgcac
acacacaggattggtcgaactggtcgcgctggagagaagggtgtcgcttacactctcctc
accaacaaagacaccacattcgctggtgacctcgtgagaaatctagagggagctaatcaa
gccgtttccaaagaactgatggatttagccatgcagaatccctggttcaggaagtcccga
ttcaagggtggtaaaggaaaaaagatgaatattggtggaggtggtcttggttacagagag
agaccaggcctgggggctgaaagttctgaacgcagcagcagcagcagcagcagcttgttg
tcttccactagtagctttgaaggttacagcaaaccacccactggggctatgggagatcgc
atgtctgcgatgaaacaagccttccaggctcagtataaaagccactttgtggctgcgtcc
agcggccctccaaagctcaccaccaagtctaatagctcgtcgtgctggaccagtgccggc
agcctgagctctgtgccgactgagtcccccaacagttcagaaaggtcccagagcgccgcc
ttatccatgtctggcttcaccagcgctggctccctgagctccgtgcccaccagtcaaacc
agttcacagccgagctaccctccgcctgcacctcccccacagagagacatcccacgagac
agacacggggaggaccgagggcgccacgatagttaccaccgccacagcgacaggagcgat
cgacacagtggagaggatcgctatggagaccgggatcgccatggagacggagaccaggat
cggcatggagacggagaccgggatcgctatggcgacagagatcgtgaccgccacggggac
cgggaccgctacagcagcagcagcagcagcagcagccgccacagcgatagtcgcaacggc
gatgcaagcaagagggacagagatgaccggaggagtgagagggatgggggcgacaggggg
aatggggagggcagggacagaggagatgatagctttgctgtccctgaaccaccaaagcgt
agaaagagcaggtgggacaactga
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