Perca flavescens (yellow perch): 114545495
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Entry
114545495 CDS
T07494
Symbol
polr2a
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
pflv
Perca flavescens (yellow perch)
Pathway
pflv03020
RNA polymerase
pflv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pflv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
114545495 (polr2a)
09124 Replication and repair
03420 Nucleotide excision repair
114545495 (polr2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pflv03021
]
114545495 (polr2a)
03400 DNA repair and recombination proteins [BR:
pflv03400
]
114545495 (polr2a)
Enzymes [BR:
pflv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
114545495 (polr2a)
Transcription machinery [BR:
pflv03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
114545495 (polr2a)
DNA repair and recombination proteins [BR:
pflv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
114545495 (polr2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
114545495
NCBI-ProteinID:
XP_028419592
LinkDB
All DBs
Position
19:19176701..19190305
Genome browser
AA seq
1966 aa
AA seq
DB search
MHGPPSGDSACPLRTIKRVQFGIISPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQ
GVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFVTKIMKVLRCVCFFCSKLLVDSN
NPKIKDILIKSKGQPRKRLTHVYELCKGKNICEGGEEMDNKFGMEQQETEEDITKEKGHG
GCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEDVILGMDPKF
ARPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAHV
IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS
ARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD
NGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIIIFNRQPTLHKMSMMGHRVRILPWSTF
RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTL
TAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINV
VRTHSTHPDEEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGH
DITRLFYSNIQTVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHN
NELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINIS
QVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMG
GREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDGTVRNSINQVVQLRYGEDGLAGENVE
FQNVATLKPSHKAFEKKFKFDCTNERALRRMLQEDVVKDVLTNANVQSSLEKEFDKMKED
REVLRAIFPTGDSKVVLPCNLDRMIWNAQKIFRINTRTPTDLNPLRVVEGLQDLSKKLVI
VNGDDPLSRQAQQNATLLFNIHLRSTLCSKRMTQEFRLSTEAFDWLLGEIETKFNQSIAH
PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVF
LLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVAEDQEWVNVYYEMPDF
DVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM
NSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII
TEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL
NHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEA
SSHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPTGMF
FGTVPSPMSGMSPAMTPWNTGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYS
PAWSPTPGSPGSPGPASPYIPSPGGAMSPNYSPTSPAYEPRSPGGYTPQSPGYSPTSPSY
SPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
PTSPSYSPTSPNYTPTSPSYSPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSP
SYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSP
TSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPTSPTYSPTSPK
YSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSPAISPEDSDEENN
NT seq
5901 nt
NT seq
+upstream
nt +downstream
nt
atgcacggaccgccctccggcgacagcgcatgcccattgcgcacgatcaagagagttcaa
ttcggcatcatcagcccagatgagcttaaacggatgtcggttacagaaggggggatcaaa
taccccgaaaccacagaaggaggacgtcctaaacttggtggccttatggacccaagacaa
ggggtcatagaacgaactggaagatgtcagacatgtgcaggcaacatgacagaatgtcct
ggccattttgggcacatagaactggcaaagccagttttccatgttggcttcgtaacaaag
ataatgaaggttcttcgatgtgtctgcttcttttgctctaagctattagtggattcaaac
aatccaaagatcaaagacatcctgataaaatctaaagggcagcccaggaaacgtttgaca
catgtgtacgagctgtgcaaaggaaaaaatatctgtgaaggaggggaggagatggacaac
aaatttggaatggaacagcaggagactgaggaggacattaccaaggagaagggccatggt
ggctgtgggcgctaccagccacgtatcagacgctctggcttggagctgtatgccgaatgg
aagcacgttaatgaggattcacaggagaagaaaatcctgctgagtcctgagcgcgtgcat
gagatcttcaagcgcatctctgatgaagaggacgtcatcttgggcatggaccccaagttt
gcccgaccagaatggatgattgtaactgtgttgcctgtgcctccactggctgtcagacct
gctgtagtaatgcagggttctgctcgcaaccaggatgacttgacccacaagctggctgac
atagtcaaaatcaacaaccagctgagaagaaatgaacagagtggtgctgcagctcatgtc
atagctgaggatgtcaaactgctccagtttcatgtagccaccatggtggacaacgaattg
ccaggcctgccaagggcaatgcaaaaatctggccgccctctcaaatccttaaaacagcgt
ctaaaggggaaagaggggcgagtccgaggtaacctcatgggcaagcgtgtggacttctcg
gcccgaactgtcatcaccccagaccccaacctgcaaatcgaccaagtgggcgtaccacga
tccattgcagccaatatgaccttcccagaaattgtcacaccctttaatattgacagatta
caagagctggtgcgaagaggcaacagccagtacccaggagccaaatacatcatccgtgac
aatggagacagaattgacctgcgattccaccctaaaccaagtgaccttcacctgcagatt
ggctacaaggtggaaagacatatgtgtgacggtgacatcatcatcttcaacagacagcct
acactacataaaatgtccatgatggggcacagggtgcgaattctgccgtggtccacgttt
cgactcaaccttagtgtcaccaccccatacaatgctgactttgacggggatgagatgaac
ctccacctgcctcagtccctcgagacgagggcagagattcaggagctggccatggtgcct
cgtatgatcgtcacaccccagtccaacaggcctgtcatgggtatcgtgcaggacaccctc
acagctgtccgcaaattcaccaaacgagatgtctttttagagaggggtgaagtaatgaac
ctgctcatgttcctctccacttgggacgggaaagtgcctcagccagccatcctcaagccc
cgtcctctttggacaggcaagcagatcttcagcctaatcattcccggacacattaatgtg
gtccgcacacacagcacccatcctgacgaagaagacagtggcccttacaaacacatctca
cctggggacaccaaggtcatagtggagaacggggagttgatcatgggcatcctgtgtaag
aaatctctgggaacctcagccggctccctcgtccacatctcctacctggagatgggccat
gacatcaccagactcttctactccaacattcagactgtggtcaacaactggctgctcatc
gagggtcattccattggtattggtgactccattgctgatgccaagacctaccttgacatc
cagaacaccatcaagaaagccaaacaggatgtgatagaagtcatcgagaaagctcacaac
aacgagctggagccgacccctggtaacacactgaggcagacttttgagaaccaggtcaat
cgtatcctcaacgatgctcgtgacaaaacgggatcctcagcccagaagtctctgtctgag
tacaacaacttcaagtccatggtggtggctggttctaagggctcaaagattaacatctcc
caggttattgctgtggtggggcagcagaacgtggagggtaaacgaatccccttcggcttc
aaacaccgcacgctgcctcacttcattaaggatgactacggtcctgagagtagaggcttt
gtggagaactcctacctggctggcctgactcccacagagttcttcttccacgccatggga
ggcagagagggtctgatcgacacagctgtcaagactgctgagactggttacatccagcgt
cgtctgatcaagtccatggagtcggtgatggtgaagtatgatggcacggtgcgtaactcc
atcaaccaggtggttcagctgcgttacggtgaggacggcctggcaggagagaatgtcgag
ttccaaaacgtggcaacactcaaaccctcgcacaaagcctttgagaagaagtttaagttt
gattgcaccaatgagcgagcgcttaggcggatgctgcaggaagatgtagtaaaagacgtg
ctgacaaatgccaacgtgcagagttccttggagaaggagtttgacaagatgaaggaggac
agggaggtcctccgagccattttccccaccggggacagtaaggtggtgctgccatgcaac
ctggacagaatgatctggaacgctcagaagatcttccgcatcaacactcgaaccccaaca
gacctcaatcctctaagggtggtcgagggtcttcaggatctgagtaagaagctggtgatt
gtgaatggtgatgacccactgagcagacaggcccagcagaacgccactctgctctttaac
atccacctgcgctccacactctgctccaaacgcatgacccaggagttccgcctttccacg
gaggcttttgactggctgctgggagagattgagaccaaattcaaccagtccattgcccac
ccaggtgaaatggttggtgctctggctgctcagtcgctgggagagccagccacccagatg
accctcaacactttccactacgccggtgtgtcagccaagaacgtaacactcggtgtgcct
cgtctaaaggagttgatcaacatctccaagaggcccaaaaccccctcgctgactgttttc
ctgctgggtcaggccgctcgtgacgctgagagggccaaggacatcctctgtcgactggag
cacaccacactgcgaaaggtgacggcaaacaccgccatctactacgaccccaacccccag
aacacggtggtggccgaggaccaggagtgggtgaacgtctactacgagatgcccgacttt
gacgtgacgcgcatttcaccgtggctgctgcgcatcgagctcgaccgcaagcacatgact
gatcgcaagctgactatggagcagattgcagagaagatcaacgcaggttttggagatgac
ctgaactgtattttcaatgacgacaacgctgaaaagctcgttctgcgaatccgaatcatg
aacagcgatgagaacaagttccaggaggatgaggaggtggtggacaaaatggatgatgac
gtgttcttgaggtgcatcgagtccaacatgctgacagacatgaccctacaaggcattgag
cagatcagcaaggtgtacatgcacttgcctcagactgacaataagaagaagatcatcatc
acagaggacggtgagttcaaggccctgcaggagtggatccttgagacagacggcgtgagc
ctcatgagggtcctcagcgagaaggacgtagatcccgtcaggaccacctccaacgacatt
gtggagatcttcacggtcttgggaattgaggcagtgcgaaaggctctggagagggagttg
aaccacgtcatctcctttgacggttcctatgtcaactaccgtcacttggctctgctctgt
gacaccatgacctgccgcggtcacctgatggccatcacacgtcacggcatcaaccgtcaa
gacacaggaccacttatgaagtgctcctttgaggagacggtggacgtgttgatggaggcg
tcatcccacggcgagagtgaccccatgaagggtgtgtcggagaacatcatgcttggccag
ctcgccccggctggtacaggatgcttcgatttgctgttggatgctgagaagtgtaaatat
ggcatggagatccctacaaacatacctggcatcagcgtggctggacccactggaatgttc
tttggcacagtgccgagtcccatgagtggtatgtcacctgccatgaccccgtggaacaca
ggagcaacaccggcctatggtgcctggtcccccagtgtcggaagcggcatgacccccgga
gcagcaggtttctctcccagtgcagcatcagacgcaagtggcttctctccaggctactcc
ccggcctggtctcccactcccgggtctccgggatcgccaggacctgccagcccgtacatc
ccatctccaggtggagccatgtcacccaattactcccccacctccccggcctacgagcct
cgctctcccggaggctacaccccccagagccccggctactccccaacatcgccctcctac
tcccccacttctccctcttactccccaaccagccccaactacagcccgacgtctccttcc
tactcccccacctcgcccagttactccccaacctctccgtcctattctcccacgtctccg
tcttactccccaacgtctccctcctactcccccacctccccgtcctactcccccacatcc
ccgtcctactctcccacctcgccgagctacagccccacgtccccgagctacagcccaacg
tcacccagctactcgcccacctcaccttcttactcccccacctccccctcttattctcca
acctctccatcctactcccccacttccccgtcctactcccccacctctccttcctactcg
ccgaccagcccaagctacagccccacatcgcccaactacacgcccacctcgcccagttac
tcccccacctctccctcctactcccctacatcgccctcttactccccaacctcccccaac
tacaccccgaccagccccaactactccccaacctcgccctcgtactctcccacctctccg
tcctactcaccctccagtccacgttacaccccgcagtcgcccacctacacacccagctcc
ccctcatacagccccagctctccctcctactcccccacctcccccaaatacaccccgact
tcaccctcgtacagccccagctccccggagtacacccccacctcgccgaagtactccccg
acgtcaccgaagtactccccgacgtcaccgaagtactcgccgacttcccccacctactcc
ccaacgaccccaaaatacagccccacctctccaacctactcccccacctccccgacttac
acccccaccagccccaaatactcccctacctcccctacttactcgccaacttcacccaag
tactcacccacgtctcccacgtactcgccaactagtcctaaaggctccacgtacagcccc
acctcccctggatacagccccacgtctcccacctacagcccggccatcagccccgaagac
agcgacgaggagaacaattga
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integrated database retrieval system
