Perca flavescens (yellow perch): 114545529
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Entry
114545529 CDS
T07494
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15-like isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
pflv
Perca flavescens (yellow perch)
Pathway
pflv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pflv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114545529
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pflv03041
]
114545529
03009 Ribosome biogenesis [BR:
pflv03009
]
114545529
Enzymes [BR:
pflv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
114545529
Spliceosome [BR:
pflv03041
]
Complex A
U2 snRNP components
U2 related factors
114545529
Complex B
114545529
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
114545529
Ribosome biogenesis [BR:
pflv03009
]
Eukaryotic type
90S particles
Helicases
114545529
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
SRP54
Flavi_DEAD
Atrophin-1
AAA_29
nSTAND3
Motif
Other DBs
NCBI-GeneID:
114545529
NCBI-ProteinID:
XP_028419668
LinkDB
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Position
19:complement(22327646..22352191)
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AA seq
758 aa
AA seq
DB search
MFKRHRLDLGDDSPSKKRPSDERDRDRDRDREERSRDRDRDRDRERDGDRDVKSSAAPHS
LAAGSGGFLKQTPIQQPINPFTNLPHTPRYHEIMKKRLQLPVWEYRERFTDILMCNQSFV
LVGETGSGKTTQIPQWCVDMVRSVAGPKRAVACTQPRRVAAMSVAQRVADEMDVMLGQEV
GYSIRFEDCSSPKTLLKYMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDILMGVLK
EVVRQRADLKVIVMSATLDAGKFQVYFDSCPLLTIPGRTHPVEIFYTPEPERDYLEAAIR
TVIQIHMCEVDEGDLLLFLTGQEEIDEACKRIKREVDDLGPEVGDIKIIPLYSTLPPQQQ
QRIFEPPPPNKPSGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLL
VTAISKASAQQRAGRAGRTRPGKCFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQLKKL
GIDDLVHFDFMDPPAPETLMRALELLNYLAALNDGGDLTELGSMMAEFPLDPQLAKMVIA
SCEFNCSNEILSITAMLSVPQCFVRPTEAKKVADESKMRFAHIDGDHMTLLNVYHAFKQN
HDSTQWCYENFVNYRSLMSADNVRQQLSRIMDRFNLPRKSTEFSSRDYYTNIRRALVTGF
FMQIAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCTDIKPEW
LVKIAPQYYEMGNFPQCEAKRQLERIIAKISSKEYTQY
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atgttcaagcgacatcgtttagatttgggtgatgattcgccgagtaaaaagagaccctct
gatgagcgtgaccgcgacagggaccgagaccgtgaggaacggtcgagggacagggaccgt
gatcgggatcgagagcgtgacggggacagagatgtgaagtcatccgcggcgccccacagc
ctagctgcaggcagtggaggcttccttaagcaaacccccattcagcagccgatcaacccg
ttcaccaacctgccccacacgccacgctaccatgagatcatgaagaagcggctgcagctg
cctgtctgggaatacagagagcgcttcactgacatcctgatgtgtaaccagtcttttgtg
ctggtgggagagacaggctctggaaaaaccacacagatccctcagtggtgtgtggacatg
gtgcggtcagtggcgggaccaaagagagcagtggcctgcacccagcccaggagggtagcg
gccatgagcgtcgcccagagggttgctgacgagatggatgtcatgctgggccaagaggtg
ggctactccatcaggtttgaggactgcagctctcccaagaccctactcaagtacatgaca
gatggaatgttgctgcgggaggctatgaatgatcctctgctggagcgctatggtgtcatc
atcttggacgaggcacacgaacgcactttagcgaccgatatcctcatgggggtcctcaag
gaggtggtccgccagagggctgacctcaaggtcattgtcatgagtgccacgctcgatgcc
ggaaagttccaggtgtactttgacagctgcccactgctaaccatccccggacgcacccac
cctgtcgagattttctacacgccggaacctgagcgcgactacctggaggcggccatccgc
actgtgatccagatccacatgtgtgaggtggatgaaggggaccttctgctcttcctcact
ggacaagaggaaattgacgaagcctgcaagcgaatcaagagggaggtcgacgacctgggg
ccggaagtcggtgatatcaagatcatcccactttactccacgctgcctccacagcagcag
cagaggatctttgagccacccccacccaataaaccaagtggtgccatcggaaggaaggtt
gtcgtgtcaacaaacatcgccgagacatccctgaccatcgatggcgtggtgtttgtaatt
gatcctggatttgccaagcaaaaggtatataacccacgtatcagagtggaatcccttttg
gttacagccatcagcaaggcctcggcccagcagagggcaggtcgtgctgggcggacacgc
ccagggaagtgtttccgcctttacacagagaaagcttacaagacagaaatgcaggacaac
acgtatccagagattctgaggtctaatcttggctccgtggtgctgcagctgaagaaactg
ggtattgatgacctggtgcactttgacttcatggacccaccagccccagagaccctgatg
cgagccctggagttgctgaactacctggcagcgctcaatgacggcggtgacctgacggag
ctgggctccatgatggcagagttccccctggacccccagctggccaagatggtcatcgcc
agctgtgaattcaactgttcaaatgagatcctctccatcactgccatgttgtcagtccca
cagtgcttcgtccgtcccacggaggctaagaaggtggccgacgagtccaagatgcgcttt
gcccacatcgacggagaccacatgacgctgctcaacgtctaccacgcctttaaacaaaac
cacgactctactcagtggtgctatgaaaatttcgtcaactaccgctcgctgatgtccgca
gacaacgtacggcaacagttgtccaggatcatggaccgcttcaacctgccgcggaagagc
actgagttcagcagcagagactactacaccaacatccgccgcgcgctggtcactggcttc
ttcatgcagatcgctcacctggagcgcacaggccattacctgacggtgaaggacaaccaa
gtcgtacagctgcacccatccactgtgctggaccacaagccggagtgggtgctttacaac
gagtttgtgctgaccaccaagaattacatccgcacatgcactgacatcaaaccagagtgg
ctggtgaaaattgccccgcagtactatgagatgggtaacttcccccagtgtgaagcaaag
agacagttggagcgtatcattgcaaaaatctcatccaaggaatacactcagtactaa
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