Perca flavescens (yellow perch): 114545831
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Entry
114545831 CDS
T07494
Symbol
rfc1
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
pflv
Perca flavescens (yellow perch)
Pathway
pflv03030
DNA replication
pflv03410
Base excision repair
pflv03420
Nucleotide excision repair
pflv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pflv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
114545831 (rfc1)
03410 Base excision repair
114545831 (rfc1)
03420 Nucleotide excision repair
114545831 (rfc1)
03430 Mismatch repair
114545831 (rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pflv03032
]
114545831 (rfc1)
03400 DNA repair and recombination proteins [BR:
pflv03400
]
114545831 (rfc1)
DNA replication proteins [BR:
pflv03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
114545831 (rfc1)
DNA repair and recombination proteins [BR:
pflv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
114545831 (rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
AAA_5
AAA_30
Rad17
RuvB_N
AAA_17
AAA_33
AAA_14
AAA_7
BRCT_2
AAA_18
AAA_16
nSTAND3
NTPase_1
RNA_helicase
AAA_19
Motif
Other DBs
NCBI-GeneID:
114545831
NCBI-ProteinID:
XP_028420181
LinkDB
All DBs
Position
2:complement(23636759..23651461)
Genome browser
AA seq
1189 aa
AA seq
DB search
MDIRRFFAPTSAKPSVHKPAPNGNIKTEEKKEKKKKKKNSSSSSNEEVKKKEIAKVKSSK
PKETHKDSEKKRKKHAVIESDSEDEEPVRKSKKSPKEKQKKSQTEPPPKKDPVQYVSETD
SDSDNFQSLKKVSEPKQNGTAKQTKSDAGSVRPGVKEGLKSPVKPSSTQGKTAVKSPPVP
VTPKSAPPPPLKRTPTSVLDYFGSATVQRSDKKLVASTKRKAPTQDTDDLMSDEQIAKQL
QMDEDMELEKQVHEDEEFARTLAMLDKEPQAKKARKGSEEKSAATACPKKSSTGSAAGSP
SKTNRRGSMSEDVISPSPKKNPAPIKASSKLAMMKKREEEREERPKSKTPISPTKIKHSP
KNEPLSLSISDKRFTPKTGTTPTTVKISPKKPESTSTSPDGSEKKKVNSAAYRNFLNRDG
PRALGSKEIPQGAENCLEGCVFVLTGVMESMERDDAKSLIERYGGKVTGNISKKTTYLVQ
GRDSGVSKLEKAESLGTKILDEDGLLELIRTKPGKKSKYEIAAEAESKASKTRTPPNKTL
KSTPKAQKISPSKGNSRSPHTPSPSKTGLAQGHGARTRDGCTPPGRGSGHTARRELGLSP
STSSSSAPGPSSPSPTHEDASLLWVDKYRPRSLKTVIGQQGDQSCANKLLRWLQNWYRHH
SGGSSKPPVARFGKFGGKDDGSGFKAALLSGPPGVGKTTTAALVCEELGFSYVEMNASCT
RSKNSLKEVVSESLNNTSIESFYKGTSQKVSSKHVLIMDEVDGMAGNEDRGGIQEMIGLI
RNSKIPIICMCNDRNHQKIRSLANYCFDLRFQRPRVEQIKGAMMSLAFKEGIKIPPPALN
EMILASNQDIRQVIHNLSMWSAKNKVMTYDQCKSDAASARKDMKLGPFDVCRKVFASGEE
TAQMSLIDKSDLFFHDYSLAPLFVQENYLHVRPKAAGGDLKSHLVLLSKTADSISDGDLV
DRQIRSRQNWSLLPTQAIYASVLPGELMKGYMSQFPNFPSWLGKNSSTTKHSRIVQELAS
HMCLKTMSSRQAVNLDYLYYLRQALLSPLQRHGAEGAGEAVQLLDNYQLIKEDVDSIMEI
SVWGGQPDPYSKLDSKVKAAFTRAYNKEAHLTPYSLQAVKKGRRGGGGESEFGGEDMDNE
VQESEDEGLKTDAMIKQKKAKATKESKKEKKEDSGKGKGTGKGKAKAKK
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
atggacatcaggcggttctttgcaccgacttcagccaagccttcagtgcataaaccagct
ccaaacggaaacatcaaaacagaggagaagaaggagaagaagaagaagaagaagaattcc
tcctcatcatcaaatgaggaagtgaaaaagaaggaaatcgccaaggtgaaaagctccaaa
ccaaaggagacacacaaagatagtgagaaaaaacgaaagaagcatgcagtcatagaatca
gactctgaggatgaggagccagtgaggaagtcaaaaaaatccccaaaagagaaacagaag
aagagccaaactgagccacctcccaaaaaagatcctgtgcagtatgtctctgaaacagac
tcagacagcgacaactttcagtccttaaagaaggtgtctgaacctaagcagaatggcacg
gccaaacagacaaagtcagatgcaggaagtgttcgtccaggagtcaaagaggggctgaag
tctcctgtcaagccctcctccacacaggggaaaactgcggtgaagtctcctcctgtgccc
gtcacccctaaatcagccccgcctcctccgctcaaacgaacccccacttcagtactcgac
tacttcggcagtgcgaccgttcagcgttcagacaagaagcttgtagccagcaccaagcga
aaggctccgactcaggacacagatgatctcatgagtgatgagcaaatcgccaaacagctg
cagatggatgaggacatggagctggaaaagcaggtccatgaggacgaggagtttgccaga
actctggccatgctggacaaggagcctcaagcaaagaaggctcgtaaaggctccgaggaa
aaatctgccgcaaccgcgtgtcccaaaaagagcagtaccggctctgctgctggcagcccg
tcaaagaccaaccgaaggggcagcatgtcagaagacgtgattagtccgtctcctaagaag
aaccccgcccccatcaaagccagctccaaactggccatgatgaagaaaagggaagaagag
agagaagaaaggccaaagagtaaaacaccaatttcgcccacaaaaataaaacactctccc
aaaaacgagcccctgtctttgtcaatctcagacaagaggtttactcccaagacaggaacc
acacccaccacagtaaaaatttctcccaagaaaccagagagcacgagtacaagtcctgat
ggttcagagaagaagaaggtcaactctgcagcttacaggaacttcctgaaccgcgatgga
ccacgagctctcggctccaaggaaatcccacagggtgctgagaactgtttggagggctgt
gtgtttgtgctgacgggggtcatggagtccatggagagggatgatgccaaatccctcatt
gagcgctacggcggcaaggtgactggcaacatcagtaagaagaccacctacctggtgcag
ggcagagacagcggagtctcgaagctcgagaaggcggagagtctcggtaccaagatcctg
gatgaggatggtctgttggagctgatcagaaccaaaccaggaaagaagtccaagtacgag
attgctgcagaggctgagagcaaagcctcaaaaaccaggactccccccaacaaaacatta
aaaagcacccccaaagcccagaagatctctccctccaaggggaattccaggtccccccac
accccgagcccgtctaagaccggcttggcccaaggccacggtgccaggaccagagatggc
tgcactccacctgggagaggctcaggccacacagcccggagggagctgggcctttccccc
tccacttcttcatcttcagccccaggaccatcatcgccatcaccgacgcatgaggacgcc
agtctgctgtgggtggacaagtaccgcccacgctctctgaagactgtgattggtcaacag
ggagatcagagctgtgccaataagctgctccgctggctgcagaactggtacagacaccac
agcgggggctcttccaagccaccagttgcaaggtttggtaagtttggaggaaaagatgat
ggatctggattcaaagctgctcttctctctggacctccgggcgtgggtaagaccaccaca
gctgccctggtctgtgaggaattgggcttcagctacgtggagatgaacgccagctgtact
cgcagcaaaaatagtctgaaggaagtcgtctcagagtcgcttaacaacaccagcattgag
agcttctacaaaggcacctctcagaaagtgagcagtaaacacgtcctgatcatggatgag
gttgatggcatggctggtaacgaggaccgtggaggaatccaggagatgatcggcctgatc
agaaattcaaagattcccatcatctgcatgtgcaacgatcgtaaccaccagaagatcagg
tcactggccaactactgctttgatttgcgcttccagaggccacgagtggaacagatcaag
ggagcaatgatgtccctcgctttcaaagagggaatcaagatcccccccccagctcttaac
gaaatgatcctagcctccaatcaggatatccgacaggtgatccacaacctaagcatgtgg
tcggccaaaaacaaggtgatgacttatgaccagtgtaagtctgacgcagccagcgctcgc
aaggacatgaaactgggtccgtttgatgtttgtaggaaggtatttgcctcaggggaggag
actgcccaaatgagcctcatcgacaagtctgacctcttcttccacgactactcgctagcg
ccgctctttgtccaagagaactacctgcatgttcgaccaaaggctgcaggtggggacctg
aagtcccacctggtgttgctcagcaagaccgctgactccatctctgacggagacctggtg
gacagacagatccgctctcggcagaactggtcactcttgcccacacaggccatctatgcc
agtgtgttaccaggggaactcatgaaaggctacatgagtcagttccccaacttccccagc
tggctcggcaagaactcctccaccaccaaacattcccgcatcgtccaggagctggcctca
cacatgtgtttaaagacgatgagcagcagacaggcagtgaacctggactacctgtactac
ctgcggcaggcgctgctgagcccgcttcagaggcacggagcggagggcgccggcgaagct
gtgcagctgctggacaactatcagctcatcaaggaggacgtggacagcatcatggagatc
agcgtctggggcggacaaccagacccttactccaaactggactccaaggtgaaggcagca
ttcacacgagcctacaacaaagaagctcacctgacgccatactctctgcaagcagtgaag
aagggccgccgtggtggcgggggagagtcagagttcggaggagaggacatggacaacgaa
gtgcaggagtctgaagacgagggcctcaaaaccgacgccatgatcaaacagaagaaggcc
aaagccaccaaggagtcaaagaaagagaagaaggaagattctggaaagggcaaggggacg
ggcaaaggcaaagccaaagccaagaaatga
DBGET
integrated database retrieval system
