KEGG   Perca flavescens (yellow perch): 114546387
Entry
114546387         CDS       T07494                                 
Symbol
hltf
Name
(RefSeq) helicase-like transcription factor isoform X1
  KO
K15711  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
Organism
pflv  Perca flavescens (yellow perch)
Brite
KEGG Orthology (KO) [BR:pflv00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:pflv04121]
    114546387 (hltf)
   03400 DNA repair and recombination proteins [BR:pflv03400]
    114546387 (hltf)
Enzymes [BR:pflv01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     114546387 (hltf)
Ubiquitin system [BR:pflv04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    114546387 (hltf)
DNA repair and recombination proteins [BR:pflv03400]
 Eukaryotic type
  TLS (translesion DNA synthesis) factors
   Rad6 epistasis group
    114546387 (hltf)
SSDB
Motif
Pfam: SNF2-rel_dom HIRAN Helicase_C zf-C3HC4_3 zf-C3HC4 zf-C3HC4_2 zf-RING_UBOX zf-RING_2 DEAD RING_XB3-XBAT31 zf-RING_5 zf-ANAPC11 ResIII zf-C3HC4_4 Prok-RING_4 DUF5817 HDA2-3 zf-rbx1 zf-Nse zf-RING_4 DUF1644
Other DBs
NCBI-GeneID: 114546387
NCBI-ProteinID: XP_028420940
LinkDB
Position
20:21735161..21752470
AA seq 975 aa
MFSSRWRFGLDRYSEVDLFTDRYEADVETLSQAIRAAASEEPDADGSVLFGHLKGTVVGL
RYYTGVVNQGEMVGLVRQPENPYDRNAVMVANIYGNQVGHIKRELAAAMAHVMDNNLAKV
EGVVHSGTKNTFTMPVMLSFWGKEENKNAVIEGMARRGYKLNTGGSSATGTNQKSSSQGA
RAMSSKKGLTIPLTAQELKNAFDNLFDGLMESKDGEKEAAKSVGTPLLPHQKQALSWMCA
RENKSALPPFWEKRGELYYNSLTCFSAKEIPERIRGGILADDMGLGKTLTTIALILTNFH
NGKPLPVETFEERSSPIKAKTKLQEGSSAGDRAEVSNVSVSAAGPQCSHLPQVEVICVNT
TDVVEIVDSADIVEIADKSDNSTSKGKKKANKRKPIKEAPVMLEDLDFAAALGGSAADTG
LKKKKTAKKAGPTLGVESSVTESADDLSARTTLIICPLSVISNWLHQLEQHVRANVKLNV
YLYYGSERNRSKAFLSSQDVVITTYNVLSADSGNKSPLHGINWLRVVLDEGHVVRNPNAQ
MSKAVLGLKAQRRWILSGTPIQNSVKDLWMLLAFLRLKPFDVREWWNRVIQRPVTEGDRA
GLQNLQTLVKCITLRRTKSSEVNGRPLVSLPEKAVCVEQVELSQTEREEYELARNEGKNT
IRKYVAEGTVLRNYADVLAILMRLRQHCCHPDLLAKTSSDLGAAATPAELRERLIDKLRL
VLASGSDEECSVCLESVHLPVITHCAHVYCRPCIAQVINTEQETARCPLCRSEIKTNELV
EFPQEEMEEEKSTNSDKWRTSSKVQALMGNLLRLRCEDSSIKYLVVSQFTRFLSILETPL
REHGFSFVRLDGTMSQKKRTQVIQEFQSSAADSPAIMLLSLKAGGVGLNLTAASHVFLMD
PAWNPATEEQCIDRCHRLGQTRKVVVTKFIVKDSVEENMVKIQRQKQDLVEKAFGSSNPE
RKTSRIDDIKALMEL
NT seq 2928 nt   +upstreamnt  +downstreamnt
atgttttccagcaggtggaggttcggcttggacaggtacagtgaggtggacctctttacg
gaccgctatgaggccgatgtagagaccctctcccaggccatcagagctgcagcgtctgag
gagccggatgcagatggcagcgtgctgtttggccacctgaagggcactgtggttggcctc
agatattatacaggggtggtgaatcaaggggaaatggtcggtttagtgcgacagcccgag
aatccatacgaccgcaatgcagtgatggtcgccaacatttatggcaaccaagtgggtcac
atcaagcgggagctggcagcagccatggcccacgtcatggacaacaatttggctaaagta
gagggggtggtacactcagggacaaaaaacacatttaccatgccagtgatgctgtccttt
tgggggaaagaagagaacaaaaatgctgtgattgaaggcatggcacgtcgcggatataaa
ctgaacacaggtggaagcagcgcaacaggtacaaatcagaaatcgtctagtcaaggtgct
cgtgcaatgtcatctaaaaaaggattgaccatcccactaactgcacaggagctgaagaat
gcatttgacaacctctttgatggtttgatggagagtaaagatggagagaaagaagctgcc
aagtctgtgggtacgcctctcctgcctcaccagaagcaggcactgtcctggatgtgtgct
cgagagaacaaatctgcgctgccacccttttgggagaagagaggcgagctctactataac
agcctcacgtgtttctctgccaaagaaataccagagagaatccgtggaggaatactggca
gatgacatgggactggggaaaactctgacaaccattgctctgattctcaccaactttcac
aatggaaagcctctgcctgtggagacatttgaggagcggtcttcacctatcaaagccaaa
actaaactacaagaaggcagcagtgcaggcgatagagcagaagtgagcaatgtctcagtg
tcagcagctggtcctcaatgctcacaccttcctcaggtggaggtgatctgtgttaatacg
acagacgtagtggagatagtggactcagcagacatagtggagatagcggacaagtcagat
aacagtacaagcaaaggaaagaagaaagccaacaagcgaaagcctattaaagaggcccca
gtaatgctggaggatctggactttgctgcagcacttggtggctcagcagcagatacaggc
ttaaagaagaagaaaactgccaagaaggccggtcccacactgggtgtggaatcctccgtc
actgaaagtgctgatgacttatcagctagaacgactctcatcatctgcccgctctctgtg
atcagcaactggctgcaccagttggagcagcatgtgcgtgcaaacgtgaagctaaacgtg
tatctgtattatggctcggagcgcaacaggagcaaggcctttctgtcctctcaggatgtg
gtgatcaccacctacaacgtcctctctgccgactctgggaataagagtcccctccatggg
atcaattggctgagggttgtgctggacgaaggacacgttgtaagaaacccaaatgcacag
atgagtaaggctgtgctcggcctaaaagctcagcggcgctggattttgtcaggtactcct
atccagaacagtgtgaaggacctgtggatgctgctggccttcctgcgtctgaagcctttt
gatgtgagagagtggtggaacagagtgatccagagacctgttactgaaggagacagggcc
ggcctgcagaaccttcagaccctggtgaagtgcatcaccctgcggcgaaccaagagcagt
gaggtgaatgggcgccccctggtgtctctgcctgagaaggcagtatgtgtggagcaggtc
gagctgagccagacagagagggaggagtacgagctggcacgcaatgagggaaaaaacact
atcagaaagtacgtagctgaagggacagtcttgaggaattatgccgacgtgttggccatc
ctgatgaggcttcgacagcactgctgccaccctgatctactggcaaaaacctcctcagac
ctgggtgctgcagctacacctgcagagctgcgggagcgtctgatagacaagctacggttg
gtgttagccagcggctcagatgaggagtgctctgtgtgtctggagtcggtgcatctgcct
gtcattacacactgtgcccatgtctactgccggccctgcatcgcccaggttatcaacact
gagcaggaaacagcacgctgtcctctctgtcgaagtgaaatcaagaccaatgaactggtg
gagtttccacaggaggaaatggaggaagagaaaagtacaaactctgataagtggaggaca
agctcaaaggtgcaggcactgatgggaaacttgctcaggctgcgctgtgaggacagcagc
attaagtatttggtcgtctctcagtttacacgcttcctctccatactggagactccactc
agagagcatggtttcagttttgtgcgtttggacggcactatgagccaaaagaagaggact
caggtcatccaggagtttcagagctctgcagccgacagccctgccattatgcttctgtca
ctcaaagctggaggggtggggctaaacttgacggccgcttctcatgttttcctcatggac
cctgcgtggaatcctgccactgaggagcagtgtattgaccgctgccaccgtctgggacag
acgaggaaagtcgtcgtcactaagttcattgtgaaagattcagtggaggagaacatggtg
aagatccagaggcagaagcaggatctggtggagaaggcttttggctcctcaaacccagaa
aggaaaacgtctcgcattgatgacatcaaagctctgatggagctgtag

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