Perca flavescens (yellow perch): 114546746
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Entry
114546746 CDS
T07494
Symbol
shprh
Name
(RefSeq) E3 ubiquitin-protein ligase SHPRH isoform X1
KO
K15710
E3 ubiquitin-protein ligase SHPRH [EC:5.6.2.-
2.3.2.27
]
Organism
pflv
Perca flavescens (yellow perch)
Brite
KEGG Orthology (KO) [BR:
pflv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pflv04121
]
114546746 (shprh)
Enzymes [BR:
pflv01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
114546746 (shprh)
Ubiquitin system [BR:
pflv04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
114546746 (shprh)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
SHPRH_helical-1st
SHPRH_helical-2nd
Linker_histone
Helicase_C
zf-RING_UBOX
zf-C3HC4
PHD
zf-RING_2
zf-C3HC4_2
zf-RING_5
zf-C3HC4_3
DUF2089
TPR_10
LMBR1
Motif
Other DBs
NCBI-GeneID:
114546746
NCBI-ProteinID:
XP_028421562
LinkDB
All DBs
Position
20:complement(23920166..23938753)
Genome browser
AA seq
1658 aa
AA seq
DB search
MSSRRKRAPPVRVDEDVKKRLNWNMLDDRKNEEIQVDEQTPTCSILPVDPPPSNSFLPAA
EDVPEAACSSSVGFPEELPGTSSDSSSASASLALSVVPALKLGHSWKALIGEFSVHPAWI
PSDCELRALVLHRMGEQLCLSYSGYDESSGLQWRADEDACTAECSLSGIPLEDLDWMQKR
KVVQLCHQAKESSVEVGIYLLETGLGKPEYLSEGNARMKKANQLMQKLMEYFYDFIIPEI
VENDEEECDTDLERQNVEELYDYVRHLHQRESQEATYDVQHKALIPVLRPYQSQAVNWML
KRERYRNTTPKEQILHFLWREVITLCGKKLFYNPFTGCLIREFPLAGVEWPGGILADEMG
LGKTVEVLALILFHTRQDLEQEALTLPVGKSVNYFIPPPPLEKKVIRCKSEVQPKMKVSY
PTVRVMLLTAIKEMRSGKGASVNAVFTYIRATYGYDLLKNRNHIKKMLVKLIDEGLVDRV
KGRGLAGSFKLGKNYKETKKTSTGASKSNSRNTESTPRKVFQRRAKEKAEAALQNSLLTD
DLRDQYSPASDCLEPEETATKKEWDESLKKKAEDMLGHSRTALQMAQDKSESDTRDVPRM
DDLPEERGEALQLESEEMETPTRASVFPFNTPDYRFECICGELGIVDYKARVQCMNCQLW
QHADCVNYKEESLETTPFYCPHCLVAMKPVSTGATLIISPSSICHQWVEEINRHIRSSSL
RVLVYQGVKKHGFIQPHMLAEQDVVITTYDVLRSELNYVDIPHSNSKDGRRFRNQKRYMA
IPSPLVAVEWWRICLDEAQMVECPTAKAAEMALRLASVNRWCVSGTPVQRGLEDLYGLVL
FLGVDPYWVKHWWDQLLYRPYRRGNTEPLYNVIAQLLWRSAKKDVIDQIQIPPQTEEVHW
LHFSPVEGHFYHRQHEVCSQDALAKLRKISDWSLKLGSLDRRTVHTILGPLLRLRQACCH
PQAVRGEFLPLQKSTMTMEELLKSLQKKCRVECEEAHRQLVCALNGLAGIHIIRDEFVEA
TEMYREVLRSSEEHKGRLKTDSLQRLHATHNLMELLSAKHPGIPPTLRDDRLSEEAEQLR
QHYMTKYDSEVADARQALQPVLQNIKELKRKVKLNNPWWLDVIQKAIRCSNDDDLVSRIK
NELTSSYKQQANKLTMAEKFRDACGLQFLLTTQMQDLMKSQKTVQDAVKSLEGPASKKVI
DEATICHLRPMRLPLNNCVFCKADVLFIDYESKLFSHTVKGQTAIFEEMIEDEEGLMDDR
LPTTSRGLWAASETERSLKAILSFAKVKRMDAELVEEGNTFMELFEYWKKEYKVLHEYWM
VLRNHVSAIDEMGMATERLRVRLPDEPKPKLLHIIEPHEVEQNRVKLLNDQAVAKSQLQK
KLGQFLYLTNLEKSQDKSTGGLNPEPCPICARPLGQEWAVLTCGHCFCNECIAIIVEQYS
VGSRRRSIKCAICRQTTSLTEISYVFTTQSSSQDQDIPVKGSHSTKVEAVVRTLKKIQVT
DPGAKCLVFSTWLSVLDIIAKALFDNNMEFSQINGIHKFQENLCSFKYEEKINILLLPLH
TGSNGLNIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTFVHRFLIKSTIEERMQAM
LKTAEKNHTSTTMKHSEAAVLTVADLADLFTEDTEHLE
NT seq
4977 nt
NT seq
+upstream
nt +downstream
nt
atgagtagccgaagaaagagggcccctcctgtgagggtggacgaagacgtcaagaagagg
ttaaactggaacatgctggatgaccgcaagaacgaggaaatccaggtagatgagcagaca
ccgacctgctccattcttcccgtcgaccctcctcccagcaactcctttctcccagccgcc
gaggatgtcccggaggctgcctgcagcagctcagtcggtttcccagaggaacttcccggt
acgtcgtcagacagcagctctgcctcggcctccctggccctcagcgtggtgccggctttg
aagctgggccacagctggaaggcgcttatcggggagttcagcgtccatccggcttggatc
ccatctgactgtgaactgagagctttggtgctccacaggatgggtgagcagctttgcctc
agctacagcggctatgatgagagctcgggactgcagtggagggccgacgaggacgcctgc
acagcggagtgcagcctcagtgggatcccgctggaggacctcgactggatgcagaagagg
aaggtggtgcagctctgccaccaggccaaagagagctcagtagaggtggggatttacttg
ctggaaactgggctcgggaagccagagtacctcagcgagggaaacgctcggatgaagaaa
gcaaatcaattaatgcaaaagttaatggagtatttctacgatttcattatacccgaaatt
gtagagaatgacgaggaggaatgtgacactgacctggagaggcaaaatgtggaggagctc
tatgattacgtcagacatctgcaccagagagagagccaggaggcgacatatgacgttcag
cacaaagctcttattcctgttctcagaccctatcagagccaggcggtcaactggatgctg
aagagagagagatacaggaacactacacctaaagaacaaattctgcatttcctctggcgg
gaggtgatcactttgtgcggcaagaagttgttctacaacccctttaccggctgcttaata
cgagaatttcccctggcaggtgtggagtggcctggtgggatcttggcagatgaaatgggg
ctgggaaagacagtggaagttctggctctcatcctgtttcacacccgacaggacctggag
caggaggccctcaccctgcctgtgggaaaatctgtaaattatttcatacctcctcctcct
ctagagaaaaaggtcatccgctgcaaatctgaagttcagcctaaaatgaaagtatcttac
ccaactgtgcgggtcatgctcctcactgcaatcaaggagatgagatctggcaaaggagcc
tccgtcaacgccgtcttcacctacatccgtgccacttacggttatgacctcctaaaaaac
cgcaaccacatcaagaagatgctggtgaagctgatagacgaaggcctggttgaccgggtc
aaaggccgcggcttggcggggtcatttaaactgggaaagaactacaaagagacaaaaaag
acatcaacaggagcatccaagtctaactccagaaacacagagagcacgccgaggaaagtg
tttcagagacgagcaaaagagaaggcagaagcagcgctgcaaaactctcttcttacagat
gatctgagagatcagtactctcctgcgtcggactgtctagaaccagaggagacggcaacg
aagaaggaatgggatgaaagtctgaagaagaaagcagaagacatgctgggtcattccagg
acagccttacagatggctcaggataaaagtgagtcagatacacgggacgttcccagaatg
gatgatctacctgaagaaaggggagaagctcttcagcttgaatcagaagagatggaaacc
cccaccagagcgtccgttttccctttcaacaccccagactaccgctttgagtgcatctgt
ggtgaactgggcattgttgactacaaggctcgtgtccagtgtatgaactgccagctgtgg
cagcatgcagactgtgtaaactacaaagaagaaagcctcgagactacacctttctactgc
ccccactgcctggttgccatgaagcccgtctccaccggtgccaccctcatcatctccccg
agctccatctgccaccagtgggtggaggagatcaaccggcacatcaggtcctcctcgctg
cgagtgctggtttatcagggtgtgaagaagcatggattcatccagccacatatgctcgct
gagcaggatgtggtcatcaccacctacgacgtgctgcggtcagagctcaactacgtggac
attccgcacagcaacagcaaggatggacgccgcttccgcaaccagaagcgctacatggcc
atacccagtcctctggttgctgtggagtggtggcgcatctgtctggacgaggctcagatg
gttgaatgtcccactgccaaggctgcagagatggctctgcgcctcgcatcggtcaaccgc
tggtgtgtcagtggcactccggtccagagaggcttagaagatctgtacggccttgtactt
ttcctgggagttgacccgtactgggtaaaacactggtgggaccagctgctttatcgccct
tatcgccgtggaaacacagagccgctgtacaatgtaattgctcaattgttgtggcgatca
gctaaaaaagacgtcattgatcagatccaaattccgcctcagacagaggaggtgcactgg
ctgcacttctcccccgtcgagggacacttctaccaccgtcagcacgaggtctgctcccag
gacgctctggccaaactcaggaagatatccgactggagcctgaaacttggcagcctcgac
cgccgcaccgtccacaccatcctgggcccgctgctgaggctgcgtcaggcctgctgccat
ccacaggctgtgaggggggagttcctgccactgcagaaaagcaccatgacgatggaggag
ctccttaagtccctgcagaagaaatgtcgagtggagtgtgaagaagctcacagacaattg
gtgtgcgcactcaatggcctggctggaatacacatcatcagagatgagtttgtagaggca
accgagatgtatagagaagtgcttcgttcatcagaagaacacaaaggcagactgaaaacc
gattcattacagcgacttcatgctacccacaatttgatggaactgctcagcgcaaagcac
cctgggatacctcccacgctaagagatgacagactaagtgaggaggcggagcagctgcga
cagcactacatgaccaaatacgactctgaggtagcagatgcccgtcaggctctgcagcca
gtgctacaaaatatcaaagagctgaaacgcaaagtgaagctgaataatccctggtggctg
gatgttatccagaaggcgatccgctgctccaacgacgacgacctggtgtcccgcatcaag
aatgagctgacgtccagctacaaacaacaagccaacaagctcaccatggcagaaaagttc
cgcgatgcctgtggtctgcagttcctactcaccacacaaatgcaagatctgatgaaatcc
caaaagactgtgcaggacgcggtgaagagtctcgaaggcccggcttcaaagaaagtgatt
gatgaggccaccatttgtcacctcaggcctatgagactaccactcaataattgcgttttt
tgcaaagcggatgtacttttcatcgattatgagtccaagctgttttctcacacggtgaag
ggtcagacggccatctttgaagaaatgattgaagatgaagaggggctgatggacgaccgt
ctccccaccaccagccgaggtctgtgggcagccagcgagactgagcgctcgctcaaagcc
atcttgtcttttgccaaagttaaacgcatggacgcggagttggtggaggagggcaacact
ttcatggagctgtttgagtactggaagaaagagtacaaggtgctgcatgagtactggatg
gtgctgaggaaccacgtgtcggccatcgatgagatgggtatggccaccgagagactacgc
gtgcgtctgcccgatgaacccaagcccaaactgctgcacatcatcgagccacatgaagtg
gagcagaacagagtgaagcttttgaatgaccaggcagtggccaagtctcaactccaaaag
aagcttggccagtttctgtatctcacaaatctggagaagtcccaggacaagtctactgga
gggctgaacccagagccgtgccccatctgtgcccggcccctgggacaggagtgggcagtg
ctgacctgcggccactgcttctgcaatgagtgcattgctatcattgtggagcagtacagc
gtgggctcaaggcggcgttccatcaaatgtgccatctgcaggcagactacgtccctcaca
gagatctcctacgtgttcaccacccagtcgtccagtcaggaccaggacataccggtcaaa
ggaagccactctaccaaagtggaggcagtagtgagaacacttaagaagattcaagtgacc
gaccccggggccaagtgtctcgttttctccacgtggctgagtgtcctggacatcattgcc
aaggccttgttcgacaacaacatggagttctctcaaatcaatgggattcacaaattccag
gagaatctgtgctccttcaaatacgaagaaaagatcaacatccttctccttcctctccac
accggctccaatggtctgaacatcatcgaagcgactcacgtgttgctggtggagccgatc
ctcaacccagctcacgagctccaggccataggcagagtgcatcggattggccaaaccaag
ccaacatttgtccacagattcctcatcaaatccaccattgaagagagaatgcaggcaatg
ctgaagaccgcagagaaaaatcacaccagcactaccatgaagcactcggaggctgccgta
ctgacagtagccgacctggctgatctgtttactgaagacacagaacatctggagtga
DBGET
integrated database retrieval system
