Perca flavescens (yellow perch): 114547177
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Entry
114547177 CDS
T07494
Symbol
dicer1
Name
(RefSeq) endoribonuclease Dicer
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
pflv
Perca flavescens (yellow perch)
Brite
KEGG Orthology (KO) [BR:
pflv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pflv03036
]
114547177 (dicer1)
Chromosome and associated proteins [BR:
pflv03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
114547177 (dicer1)
microRNA pathway
RISC loading complex
114547177 (dicer1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Dicer_platform
Dicer_dsRBD
Dicer_PBD
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
PAZ
Helicase_C
DEAD
ResIII
Cas3-like_C_2
dsrm
Motif
Other DBs
NCBI-GeneID:
114547177
NCBI-ProteinID:
XP_028422209
LinkDB
All DBs
Position
20:complement(4668198..4719820)
Genome browser
AA seq
1890 aa
AA seq
DB search
MAGLQLVTPATSPMGPFFGLPWQQEAIHDNIYTPRKYQVELLEAALEHNTIVCLNTGSGK
TFIAVLLTKELSHQIRGHYQENAKRTVFLVNTVVSVVQQAAAVRTHSDLQVGEYTDLEET
SAWTDQRWSREIIENQVLVMTCHIFLHILRKKILPLSKINLVVFDDCHLAITDHPYCEIM
KLFEGCSCSPRILGLTASILNGKCDPSELEHKIQNLESILKSNAETATDLVVLDRYASQP
REVVLDCGPYVDKSGLSSSLQVELDEALHFLNDCNVSFAREDRDPTYISKQVLSDCRAVL
QVLGPWCADKAAGIMVRELQKYIKHEQEELNRKFLLFTDTILRKVHALCEEHFSPAALDL
KFVTPKVLRLLEILHEYKPFERQQFESVEWYNNRNQDNYVSWSDSEDEDEDEEVEAKERP
EANFPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHSIGKNQPR
NKQMEVEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSK
GRARAPVSNYIMLADSERTKTFEEDLTTYKAIEKILRNKCSKSVEVSEFEVEQVLDDDNV
LPPYVLRSEDGGPRVTINTAIGHINRYCARLPSDPFTHLAPKCKTAERQDDRFQSTLYLP
INSPLRVPIKGPTMNCARLAEKAVALVCCEKLHKIGELDDHLMPVGKETVKYEEELDLHD
EEETSVPGRPGSTKRRQCYPKAIPECLRDSYAVPEQTYYLYVVGMVLTTPLPDELNFRRR
KLYPPEDTTRCFGILTAKPIPRIPHFPVYTRSGEVTISIELQKSGFALTTAQLDLITRLH
QYIFSHILRLEKPALEFKPTLADSAYCVLPLNVVGDSSTLDMDFGFMEDIEKSEARTGIP
TTQYTKQNPFIFKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPSPEYETFAE
YYKTKYNLDLSNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNK
QILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQTATEAGVGAQTLPPDFR
YPNLDFGWKRSIDSKTFISCPDSCSEDGEGDCEHQETLSPERGPLEPGEATCTGNLTNGT
AVVTDCDDDGRQDEHLHQRDNCQRSQPSSPGLPSPESIQTTTSVPAQPSHSLKKPSSSPP
QPSDECTPGRPSDHANKATSVCSRAATTPNAPTAPSPPDLDAVPQHRAQTGDSPKSLGPN
PGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSN
CNLYRLGKKKGLPSRMVVSIFDPPVNWLPPGYVVNQDKSSTDKLDSEEAKEELLANGQSG
NDSDEDDEEEGEEADEDSELMLKEEPKDEVNMEDDLEYYKEHIKFIDNMLLGSGAFGKKI
SLSGFPPSLAPAAASSPAMESPYEWKPPKKSPHPTAAHYPAEPAPSGPSAEEFDYSSWDA
MCYLDPSKAGEEDDFVVGFWNPSEENCGAELGKQSISYDLHTEQCIADKSIADCVEALLG
CYLTSCGERAAQMFLCSLGLKVLPLERGALTGAVVQSCRITTIDLCYGWLKIPPRCLLDH
PDAERTLNHLISGFENFEKKINYTFQNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAIL
DYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAISPELFHVIDDF
VQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSRMSLETVWQ
VYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDGKVRVTVEVVGKGKFKG
VGRSYRIAKSAAARRALRSLKANQPQVQNN
NT seq
5673 nt
NT seq
+upstream
nt +downstream
nt
atggcaggcctacagcttgtcacccctgccacttcacccatggggcctttctttggtctg
ccatggcagcaggaggctatccatgataacatctacacacctaggaaatatcaggtagaa
cttcttgaagcagctcttgaacataatactatcgtctgcttgaatactggctcagggaag
acctttattgcagtacttctaacgaaagagctctcccaccaaatccgtggacattaccaa
gaaaatgcgaagaggactgtttttctggtgaacacagttgtgtctgtagttcagcaagca
gctgcagtcaggactcactcggacctccaagtgggagagtacacagatctggaggagacc
tcagcatggacagaccagcggtggagtcgagagatcatcgagaatcaggtgctggtcatg
acttgccacatattcctgcacattctgaggaagaaaatcttaccgttgtctaaaatcaac
ttggtggtttttgacgattgtcacctggccatcacagaccacccctactgtgagataatg
aagctgtttgagggctgctcatgcagtcctcgtatcctgggtctcacagcctccattctg
aatggaaagtgtgacccgtcagaactggagcacaagatccagaatctggagagcatcctg
aagagcaatgctgaaactgccactgaccttgtggtcctggacagatacgcctctcagcca
agagaagtggtgctggactgcggcccctacgtggacaagagtggcctctcttcctctctg
caggtagagctggatgaagctctccacttcctcaatgactgcaacgtatcttttgccaga
gaggaccgtgatcccacgtacatctccaaacaggtcctgagtgactgccgggccgtgctg
caggtcctgggaccctggtgtgcagacaaggccgcaggcatcatggtgcgggagctccag
aagtacatcaaacacgagcaggaggagctcaaccgcaagtttctgctcttcaccgacacc
atcctgcgcaaagtgcacgccctgtgcgaggagcacttctcgcccgccgcgctggacctc
aagttcgtcaccccgaaggtcctgcgtctgctcgagatcctgcacgagtacaagcccttc
gagcgccagcagtttgaaagtgtggagtggtacaacaaccgcaaccaggacaactacgtg
tcctggagcgactctgaggacgaggacgaggacgaggaggtggaggccaaagagaggccc
gaggccaacttcccctcgccattcaccaacatcctgtgcgggatcatctttgtggagagg
cgttacacagccgtcgtcctcaatcgtctgatcaaagaggcagggaagcaggacccagag
ctggcttacatcagcagcaacttcatcaccggccacagcatcggcaagaaccagccgcgg
aataagcagatggaggtggagttcaggaaacaagaagaggttctccgcaaattccgggct
catgaaaccaacctgctgatcgccaccagcatcgtggaggaaggcgttgatatcccaaag
tgtaacctggtggtgcggtttgacctgcccacggagtacaggtcctacgtccagtccaaa
ggcagggcgcgagctcccgtctccaactacatcatgctagctgacagcgagaggaccaaa
accttcgaagaagacctcactacctacaaggccattgagaagatcttaaggaacaagtgc
tccaagtcggtggaggtgagtgagtttgaagtggagcaggtcctggacgatgacaacgtc
ctcccaccctacgtgctccgatctgaggatggaggtccccgggtcaccatcaacacagct
atcggacacattaacaggtattgtgcccggctgcccagtgacccgttcacccacttggca
cccaagtgtaaaactgcagagagacaggatgaccgcttccagtcaacgctctacttgccc
atcaactcccctctgcgagttcctattaagggtcctacgatgaactgtgccagactggca
gagaaagcagttgcactagtatgctgtgagaaactccacaagataggtgagctggacgat
catctgatgccggtgggaaaggagacggtgaagtacgaggaggagctggaccttcacgat
gaggaggagaccagcgttccaggccggcccggctctaccaaacggaggcagtgctaccct
aaagccataccagagtgtctgcgggacagttacgctgtaccggagcagacgtactaccta
tatgtggttgggatggtcctcaccacccctctccctgatgaactcaacttccgcaggagg
aagctctacccaccggaggacaccaccaggtgcttcggcatcctgactgccaaacccata
cctcgaatcccccatttcccggtgtacactcgctcgggcgaggtgaccatctccatcgag
ctgcagaagtcgggctttgcgctcaccaccgcccagctggacctcatcacccgcctgcac
cagtacatcttctcccacatcctccgcctggagaaacctgcactggagttcaagcccacg
ctggccgactcggcttactgcgttctacctctgaatgttgttggggactccagcacgcta
gatatggactttgggttcatggaggacattgagaagtctgaggcccgcactggcattcct
accactcagtacaccaagcagaaccccttcatcttcaagctggaggactaccaggacgct
gtcatcattccaaggtatcgcaactttgaccagcctcatcgcttctacgtcgctgatgtg
tacacagacctgaccccgcttagtaagtttccttcaccagagtacgagacatttgccgag
tactacaaaaccaagtacaacctggacctgtccaacctgaaccagccgcttctggacgta
gaccacacctcctccagactcaacctgttaaccccgcggcacctgaaccagaagggcaaa
gccctgccgctcagcagcgcggagaagaggaaggccaagtgggagagtctgcagaacaag
cagatcctggttccggagctgtgtgccatccaccccatccctgcttccctgtggaggaaa
gcagtgtgtctgcccagcatcctctaccgcctccactgccttctgactgccgaggagctc
agagcccagacagccactgaagctggagtgggagcccagacccttccccctgacttcagg
tatccaaacctggactttggctggaagagatccatcgatagcaaaacgttcatctcctgt
cccgactcctgcagtgaggatggcgagggcgactgcgagcatcaagagactctcagccct
gagcgggggcccctcgagcccggagaagccacatgcacggggaacctaaccaacggcact
gccgtcgtcaccgactgtgacgacgacggccgccaagacgagcaccttcaccaacgtgac
aattgccaacgctcccagcccagctcccctgggctgccgagtcccgaatcaatacaaacc
actacctcagttcctgcgcagccctctcacagcttgaagaagcccagctccagtcctcca
cagcctagcgatgaatgtacaccagggaggccctcagaccatgcaaataaagctacctca
gtctgcagccgggcagccacgactcccaatgctcccacagcaccttctcctcccgatctg
gacgctgtcccccagcacagagcccagacgggagactcccccaaaagcctggggcccaac
ccgggcctcatcctgcaggccttgaccctatccaacgccagcgacggtttcaacctggag
cggctggagatgctcggagactctttcctcaagcatgccatcaccacatacctgttctgt
acctaccccgacgctcacgaaggacgacttagctacatgcggagcaagaaggtgagcaac
tgtaacctgtaccggctggggaagaagaaagggctccccagcaggatggtggtgtccatc
ttcgacccccctgttaactggctgccccctggctacgtggtcaaccaggacaagagcagc
acagacaaactggattcagaggaggccaaagaggagcttctggccaacgggcagtctgga
aacgactccgatgaggacgacgaggaggagggtgaggaggcggatgaggacagtgagctg
atgctgaaggaagagccaaaggatgaagtcaacatggaggacgatctggagtattacaag
gagcacatcaagttcatagacaacatgttgttgggatccggcgcgtttggtaagaagatc
tccctgagcggcttccctccctctctcgccccggccgccgcttcctcccccgccatggag
tctccatacgagtggaagccccccaagaagtccccccatcccaccgccgcccactacccc
gcggagccggcacccagcgggccctccgccgaggagtttgactacagctcgtgggacgcc
atgtgctacctggatcccagcaaggccggggaggaggatgacttcgtggtgggcttttgg
aatccgtctgaggaaaattgcggcgcggagctcggcaagcagtcgatctcctacgacctg
cacacggagcagtgcatcgctgacaagagcattgccgactgcgtggaggccctgctgggc
tgctacttgaccagctgtggcgagcgagcggcccagatgtttctctgctcgctgggcctc
aaggtgttaccgttggagagaggggccctgaccggagcagtggtgcagagctgtcggatc
accaccatcgacctgtgctacggctggctgaagatcccgccgcgctgcctgctggaccat
ccagacgcagagcgaactctcaaccacctcatctctggcttcgagaactttgaaaaaaag
atcaactacacatttcagaacaaggcttaccttctgcaagccttcacccacgcttcctac
cattacaacaccatcacagattgttaccagcggctggagttcctcggcgatgcaattcta
gactacctcataacaaagcacctttatgaagacccgcggcagcactctcccggcgtgctg
accgacctgcgctcggcactcgtcaacaacaccatctttgcctctctggccgtcaagtac
gactaccacaagtacttcaaggccatctcgcccgagcttttccacgtcatcgacgacttt
gtgcagtttcagctggagaagaacgagatgcaaggcatggactccgaactgcggcgctct
gaagaagacgaggagaaggaggaggacatcgaggtccctaaggccatgggggacatcttt
gagtcgctagccggagcaatttacatggacagcagaatgtcactggagacggtgtggcaa
gtgtattatcccatgatgaggccacttatagagaaattctctgccaatgtgccacgctct
cctgtgagggagctgctggagatggaaccagaaactgccaagttcagccctgcagagaga
acgtacgacgggaaggtccgggtgacggtggaggtcgtcggtaagggcaagtttaaagga
gtcggccgcagctaccggatcgccaagtcggcggcggcgcggcgagcgctgcgcagcctc
aaagccaatcaacctcaggtccaaaacaactga
DBGET
integrated database retrieval system
