Perca flavescens (yellow perch): 114547687
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Entry
114547687 CDS
T07494
Symbol
msh2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
pflv
Perca flavescens (yellow perch)
Pathway
pflv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pflv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
114547687 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pflv03400
]
114547687 (msh2)
DNA repair and recombination proteins [BR:
pflv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
114547687 (msh2)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
AAA_27
Motif
Other DBs
NCBI-GeneID:
114547687
NCBI-ProteinID:
XP_028422805
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Position
21:10152981..10165754
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AA seq
958 aa
AA seq
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MGIPNAKKKNVVSCLASAKAGDSSMAVQPKQNLSMDSAGEHGFLNFIFSMPEKPDTTFRI
FDRNDYYTVHGKDAIFAAKEVFKTNGVIKYLGSGSRKLESVVLSKLNFEAFVKDLLLVKQ
YRVEVYKNHSKSSKEHDWKIEYKASPGNLTQFEEILFGSGTGAVGCAGVVAVRFTTGADG
QRVVGVGYVDAAQRTMGVCEFPDNEIFSNLESLLVQISPKECLLAQGESNSDAIKLREVV
QRGGMLVSDKKRSEFNSKDMVQDLNRLLRAKRGETVASNALPELDKQVAMSCLAAVVRFL
ELLSDESNFNSFSLTTLDLGQYMRLDNAAVRALNLFQGSPDDTSGAHSLAGLLNKCRTPQ
GQRLVNQWIKQPLIDIAKIEERLDLVESFVCDSELRQSCQEDLLRRFPDLHRLAKKFHRH
SATLQDCYRVYQAVSHVPALVMALERYSGSYQVLLEAVFLSPLRELQTDFVKYQEMIETT
LDMNQIDHHEFLVKASFDPVLSELREKMDALEKSMQGVLNSAARELGLDAGKTVKLESNA
MLGFYLRVTCKEEKSLRNNKKFTTLDVQKNGVRFTNGKLSSLNEEYTKNKEEYEEAQNAI
VKEIINIASGYVDPLQALSDVIAQLDAVASFAVASVSAPVPYVRPRLLADGRRRMELQQA
RHPCMETDADTAFIPNDVSFVQGEKNFYIITGPNMGGKSTFIRQVGVIALMAQIGCFVPC
EKAELSVIDSVLARVGAGDSQVKGVSTFMSEMLETAAILRSATENSLIIIDELGRGTSTY
DGFGLAWGISEHIASKISCFCLFATHFHELTALAAQQPTVHNLHVTALTSHNTLTMLYRV
KSGVCDQSFGIHVAELACFPPSVVAMAKEKAEELEEFQEPAGESEQEEEPESKRRRTDKL
VGENLIQDFLEKAKSLPAATMSDEEVKAALRRMKQELVAKNNTYIKELLSRCVPAKTA
NT seq
2877 nt
NT seq
+upstream
nt +downstream
nt
atgggtataccaaacgcaaagaagaagaacgtagtttcctgtttggcttcagcaaaggcg
ggagattccagcatggcggtgcagccgaaacaaaacctgtctatggacagtgctggcgag
catggctttctaaacttcattttctccatgccggagaaaccggacaccacttttagaata
ttcgaccgtaacgattactacactgttcacggaaaagacgccatatttgcggcgaaggag
gtgtttaagacgaacggggtcatcaaatatttgggctcagggagtcgcaagttggagagt
gtggtcctgagcaagctgaactttgaggcctttgtgaaagacttgctgctggtgaagcag
tacagagtagaagtgtacaagaaccacagcaagagcagcaaggagcacgactggaagatc
gagtacaaggcctctccaggaaacttgactcagtttgaggagattctgtttggtagtgga
accggagcagtgggttgtgcaggagttgtagccgtgcggtttactacaggagctgatgga
cagcgtgtggtgggggtcggctatgtggacgcagcccagaggacgatgggagtgtgtgaa
tttccagataacgagatcttttccaacctggagtcccttcttgtccaaatcagccccaaa
gaatgtctcttggcccagggtgaatccaacagtgacgccattaaactacgggaggtggta
cagcgtggcggcatgctggtctctgacaagaagagatcagagtttaatagcaaggacatg
gtccaggatctcaaccggctgctgagggccaagagaggagagactgtggcaagcaacgcg
ctgcctgagctggacaaacaggtggctatgtcgtgcttggctgcagtggtgcgtttcctt
gaactgctctctgacgagtccaacttcaactccttcagcctgactacactggacctgggt
cagtacatgaggctggacaacgctgccgtgagggctcttaacctcttccagggatctcct
gatgacaccagtggagctcattcattggccggtctgttgaacaagtgccgtacaccgcag
ggccagcggcttgtcaaccagtggatcaaacaacctcttatagatatagccaaaatagag
gaaaggctggacctggtggagagcttcgtgtgcgactccgagctcaggcagagctgtcag
gaggacttactgcggcggtttcctgatcttcaccgtctggccaagaagttccaccgtcac
tctgcaacgctgcaggactgctaccgcgtctaccaggctgtgagtcacgtcccggccctc
gtcatggccctggagagatactcaggtagctaccaggttctgttggaggcggtattcctc
tctcctctcagagaactgcagactgactttgttaagtaccaggagatgattgaaaccaca
ctggacatgaaccagattgaccaccacgagttcttggtgaaggcgtcgtttgatccagtg
ttgagtgagctgagagaaaagatggatgcgctggaaaagagcatgcagggggtgctgaac
agtgcagccagagaactgggtctggacgctggaaagacggtgaagctggagtccaatgcc
atgctgggtttttacctgagagtcacatgcaaagaggagaagagtctgaggaacaacaag
aaattcaccacgctggatgttcagaagaatggagtgcgcttcacaaacggtaagctgagc
tctctaaacgaggagtacaccaagaacaaagaggagtacgaggaggcccagaatgccatt
gtcaaagaaatcatcaacattgcctcaggttacgtggatcccctccaggcgctgagcgac
gtgatagcgcagctggacgcggtggcgagtttcgctgtggcgtccgtctctgctcctgtg
ccgtatgtcaggccccggctgttggcggacggacgcaggcgcatggagctgcagcaggcc
agacatccctgcatggagacggacgcggacaccgccttcatacccaacgacgtgtctttc
gtccagggagagaagaacttctatattataacaggaccaaatatgggcggcaaatcaacg
tttatccgtcaggtgggtgtgatcgctctgatggctcagatcggctgctttgtgccatgt
gagaaggcggagcttagcgtgattgacagcgtcctggccagggtgggagcgggagacagt
caggtcaaaggagtgtccacctttatgtccgagatgctggagacggctgccattctgcgc
tcggccacggagaactcgctcatcataatcgacgagctcggcagaggcacctccacatac
gatggcttcggtctggcctggggcatcagcgaacacatcgcctccaaaatcagttgcttc
tgtctgtttgccacgcacttccatgagctgacggcattagcagcgcagcagcccaccgtc
cacaacctgcacgtcacagccctcacctcacacaacacactcaccatgctgtacagggtc
aaatcaggtgtgtgtgaccagagtttcggaatccacgttgccgagttggcgtgcttcccg
ccatcggtggttgccatggccaaggagaaggcggaggagctggaggagttccaggaacct
gcgggggagtcggagcaggaggaagagccagagtccaagagacgacggacagacaaacta
gtgggggaaaacctaatccaggacttcctggagaaggcaaagtcactccctgctgccact
atgagtgacgaagaggtgaaagcagcactccggagaatgaagcaggagcttgttgctaaa
aacaacacttacatcaaagagctcctttcacgctgcgttcctgcaaaaacagcttga
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