Perca flavescens (yellow perch): 114547806
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Entry
114547806 CDS
T07494
Name
(RefSeq) LOW QUALITY PROTEIN: LIM domain only protein 7-like
KO
K06084
F-box protein 20
Organism
pflv
Perca flavescens (yellow perch)
Pathway
pflv04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
pflv00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
114547806
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pflv04121
]
114547806
Ubiquitin system [BR:
pflv04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
114547806
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CH
DUF4757
LIM
PDZ
PDZ_6
PDZ_2
DUF6853
Motif
Other DBs
NCBI-GeneID:
114547806
NCBI-ProteinID:
XP_028423454
LinkDB
All DBs
Position
1:20405816..20442156
Genome browser
AA seq
1420 aa
AA seq
DB search
MEWRQQTSVSCADAFDEAQRWIEEVTGKLFGSNDFRAALENGVLLCDLINQLKPGIIKRV
NRLSTPIAGLDNVNVFLKACGKLGLNVSQLFHPGDLQDLSSRATVRRDESNRRLKNVLIT
IYWLGRKAHLDAFYSGPQLNFKAFEGLLGLALSKALDEGSNVKECWDPENEECQRVRPSY
KMANSADGMDFLYSRGVLQNNESCGSDAEAEQVFKMEPTQPSTQQNKAYIPPPLLRRKQG
REENQRVCASPLSSIEDAPFSPQPHLTACPPECAIDEELFLRALCEDDSDDDYTDADPVL
DDLYFRRVQQTLHQTSNNPNYDRFLPRYWTPEEETRVRTIYLGSQRRPWYRILQGLSHKA
LGSSEEVFDFISWLVTSAAVQNISGTSGEPPNHMCFINNCLFLPLRNLYNASSLYVVFVW
FSPLSCVAFMFSMRAYQMQVRPERPVQVNPGWIWSKSLSDIPMVYPVRKVPDVNTIYDLD
QDSEAKWHDDLSKWKNRRRSSKSDLRRKSQDREHVINQMANGALAKFEKNEAQSGLLKRD
QQSPRRHYPAPRPYSTSPSAKSLSSDLRPRTRALLARSYTTEAPFSPTAPRSPHKSAYTQ
ESSVGAMPASDGIVLGEETHFASVASDGTGVTNPSLDCPFSTQTQVKVQGSPAPLQPRDP
TESMSSHKELPFCLDPKVPLSVLVLLTRQELMLWRTCPTKTTSPRKRARRPLGNQLWSKA
VSSRGSTSTCSELRHGPAHSLPRGYRRSEGSSRLSSAITARPFGTKQSRVSSLPRLCNLD
NQGLLKSEQEESLSPTTKSSLKRPTVTAHLKGQQKKANQAKQTGTKQEEQGQGATVSRPT
SFQTDGYHHQPYTQTQLLPQPYSNLQTHHNKSLTLPSDASIDLPKVAHSDMRVSLALKPN
SRTDFGFQTHWDSTGVRVKFIQPGSPAELCQLCVNDEIVTINGVAVAHMNYNQWKDKMTS
SLQTGSLTMDIRRYGNKDWSTSEGSHPNQSGQNRVTLNLTAAAPGLISCPDHHPNSGAST
ETAVRNLNGQTDNVLSQVLQGKVMHGELPDNHRTARNKGGSESAISDLQVPSLSPSSSSW
SWDREEDRRRQEKWQEEQERLLQKQYQRDQERLESEWQRAQQAAKGELCRKPGAKQNTFE
SPASTQLHVNGLKNKTREEQSPDRDKLKVAGSNPQSNASGEQHDKISGHVWAEDSCGFAQ
LSPANRAKSFSTPALDGPYKQTRGDDRKGQGQSVCKAEKDRQQILEEMKKRTQLLTDNSW
IRQRSSSFYKEPIYVGVPMKRFDSLDDLDTLRQTPLSTTTFSYPRPHSAAAGYSTPSRNS
SSRYSTGSLLSQRHALVNSSHHGRMVCGRRTCCVCERVLGSGAAMVIEALGLCFHLACFQ
CVGCHRHLEGTETGVQVRIRNRKPYCEPCYFQLKCEYWSL
NT seq
4263 nt
NT seq
+upstream
nt +downstream
nt
atggagtggcgccagcagaccagtgtcagctgtgcagacgcgttcgacgaggctcaacgt
tggatcgaggaagtgactggaaaattgtttggtagcaatgatttccgtgctgccttagag
aacggagtcctgctgtgcgacttgatcaaccagttgaaacctggcatcattaagagagta
aacaggctttctactcccatcgctggcctggataatgtgaacgtattcctcaaagcctgt
ggaaaactgggactgaatgtgtctcagctgtttcatccaggagacctgcaggacctgtcc
tctcgtgcaactgtcaggcgagatgaaagcaacagaagactcaaaaatgttctcatcaca
atctactggttgggtcgcaaggctcaccttgacgcattttacagtggtcctcagctgaac
ttcaaggcctttgaagggctattagggttggcgttgtccaaggctctagatgagggcagt
aatgtgaaagagtgctgggacccagagaacgaggaatgtcagcgcgtcagaccgagctat
aagatggcgaactctgccgacggcatggacttcctgtactcccgtggtgtcctccaaaac
aatgaaagttgtggaagtgacgcggaagctgagcaggtgttcaagatggagcccacacag
ccttcaacccaacaaaacaaggcttatatcccaccgccactcctacggaggaaacaagga
cgggaagagaatcaaagggtctgcgctagtccactctccagcattgaagacgcccctttc
tctcctcaaccccaccttactgcgtgtcctcccgagtgtgccattgatgaagagcttttc
ctaagagctctgtgtgaggacgactctgacgacgattatactgatgcagatcctgtccta
gatgacttgtatttccggcgagtgcagcagacccttcatcagacatcaaacaaccccaac
tacgaccgtttcttaccccgatattggacacctgaagaggagactcgtgtgcggacgatc
tacctcggctcccagaggagaccctggtatcgtattctgcaaggcctaagccataaagct
ttgggttcttctgaggaagtttttgacttcatttcctggcttgtgacatctgctgcagta
caaaacatctctggtacatctggagagcctccaaaccatatgtgttttataaataactgc
ctctttttgcctctacgtaatctatataatgcttcctctctatatgtggttttcgtttgg
tttagccccttgtcctgcgtggccttcatgttttctatgcgagcatatcaaatgcaggtc
agacctgagagaccagttcaggtcaaccctggctggatttggagcaaatcactcagtgat
atcccgatggtataccctgtgcgtaaagttcctgatgtgaacaccatctacgatttggac
caggacagtgaagctaagtggcacgatgacttgtcaaagtggaagaatcgtcgcaggagc
agcaagtctgacctccgcaggaagtcgcaggaccgagaacatgtcattaaccagatggcc
aatggagctctggctaaatttgagaagaacgaagcacaaagcggactgctaaagagagac
caacagtcaccacgcaggcattaccctgcccctcgtccttactccacctctccttcagca
aaatcattgagctctgatctccggccacgtactcgggctttgctggcccgcagctacacc
acggaggcacctttcagccccacggctccacgtagcccccacaagtcagcctacactcag
gaatcatcagttggagccatgcctgcctctgatgggattgtcctgggagaggagacccac
tttgcctccgtggcttcagatggaacaggagttaccaacccttctctggactgccctttc
agcacccagacccaagtcaaagtgcagggcagcccagctcctttgcagcccagggatcct
actgaatccatgtcgagtcacaaggaacttccgttctgccttgatccaaaagttcccctt
tctgtcctggtgctgttaaccaggcaggagttgatgctctggaggacttgccccaccaaa
actacaagtcccaggaagagagccagaagacctcttgggaaccagctgtggagcaaggca
gtgtcaagcagggggtcaacaagtacttgttcagaactgcgtcatggtccggctcacagc
cttcctcggggttaccggaggtccgagggctcgtctcgtctctcttctgcaatcacagcc
agaccctttgggaccaagcagtccagggtgtcctcgctgccgagactgtgcaaccttgac
aaccagggtctgttgaaaagtgagcaagaggaatccctttctccaactaccaaatcttct
ctcaaaagaccgactgtgaccgcccatctgaagggtcagcagaagaaagctaaccaggcg
aaacagactggtacaaaacaggaggagcaagggcaaggtgccaccgtctccaggccgacc
tccttccagaccgatggctaccaccatcagccctacacccaaacccagctactaccgcag
ccttattcaaacctgcagacccaccacaacaaaagcttgactctcccatctgatgcgagc
attgacctcccaaaggtggctcacagcgacatgagagtgagccttgctcttaaacccaac
agtagaacagactttggtttccagactcattgggactccacaggggtgagagtcaaattc
attcaacctggcagtccagcggagctttgccagctatgtgtgaacgatgagattgtgacc
attaatggagttgctgtggcacacatgaactacaaccagtggaaggataaaatgacatct
tcacttcaaaccggcagtctaaccatggacattcggcgctatggcaacaaggattggagc
accagtgaggggagtcatcctaaccagtcaggccagaacagggtgaccctcaatctgact
gccgcagcgcctggcctgataagttgccctgatcaccatcccaacagtggtgcctctaca
gaaactgcagtcaggaacctcaatgggcagacagacaatgttctttcccaggttttacaa
ggtaaagtcatgcatggagagcttcctgacaaccacaggacagccagaaataaaggaggt
tcagaatctgcaatatctgacctccaggtgccatccctcagcccctcctcatccagctgg
tcgtgggaccgcgaggaggatcgaaggcgtcaggaaaagtggcaggaagagcaggagcgc
ctcctacagaagcaataccagcgggatcaggagaggcttgaatcagagtggcagagagca
caacaagctgcaaagggggagttatgcaggaagccaggggcaaaacagaacacattcgag
agtcctgccagcacccagctccatgtgaatggactgaaaaacaaaaccagagaagagcag
agccccgaccgagataagctgaaagtagcaggttcaaaccctcaaagtaatgcatcagga
gagcagcatgacaagatttcgggacatgtctgggctgaggactcctgtggctttgctcag
ctgtctcctgcaaacagggcaaagtccttctctaccccagcattagatggcccctacaaa
cagacaagaggtgatgacagaaaaggacaaggacagtctgtgtgcaaggctgagaaagac
aggcagcagattttggaggagatgaagaaaaggactcagcttctgactgacaacagctgg
atacgtcagcgcagcagcagcttttacaaggagccaatctatgttggggtacctatgaag
aggtttgactctctggacgacctggatactttgcgtcagaccccactctcaaccactaca
ttcagttaccctcgcccacactcagctgctgcaggttacagtactccgagtaggaactcg
tcatcccgctacagcactggatcattgttatcccagagacatgcattggtcaattcctct
catcatggcaggatggtctgtggcaggaggacttgctgtgtgtgtgagcgtgtcctgggt
agtggggcagccatggtcatagaggcccttggtctctgctttcacctcgcctgtttccag
tgtgtgggctgccaccgacatctcgaaggaactgagactggagtccaggttcgaatccga
aacaggaagccctactgtgagccgtgctatttccaactcaagtgtgagtattggtctttg
tga
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