Perca flavescens (yellow perch): 114548218
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Entry
114548218 CDS
T07494
Symbol
trub1
Name
(RefSeq) probable tRNA pseudouridine synthase 1
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
pflv
Perca flavescens (yellow perch)
Brite
KEGG Orthology (KO) [BR:
pflv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pflv03016
]
114548218 (trub1)
Enzymes [BR:
pflv01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
114548218 (trub1)
Transfer RNA biogenesis [BR:
pflv03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
114548218 (trub1)
Prokaryotic type
114548218 (trub1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
Pus10_C
GAIN_A
Motif
Other DBs
NCBI-GeneID:
114548218
NCBI-ProteinID:
XP_028423834
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All DBs
Position
21:complement(29477934..29489925)
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AA seq
271 aa
AA seq
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MAGSISNTAAPIASSLSKLQSLNGLFAIYKKQGPTSADVLNTLKEVLLKEAGVQNPNPRK
RRKQSLKMGHGGTLDSAASGVLVVGVGNGTKMLSTMLSGSKKYVAVGELGKATDSLDATG
SVILEKDFEHITRLDIEEKLKAFTGDIMQVPPLYSALKKDGQRLSVLLKKGHKVEAKPAR
PVTVYKLTLQEFKPPLFTLDIECGGGFYVRSLVDDLGKALSSCAHVKELIRTKQGQFTLE
EHALPQDQWTLEHIRRSLQPCSDSEPPDADT
NT seq
816 nt
NT seq
+upstream
nt +downstream
nt
atggcaggaagcataagtaatactgctgctccgatagctagttctctatctaaactacag
tctttaaatggattgtttgcgatatataagaaacaaggaccgacatctgcagacgtgttg
aatacactcaaagaagttttactcaaggaagctggtgtacaaaaccctaacccacggaag
aggaggaagcagagcctgaagatgggccacggagggacgctggacagcgctgctagcggg
gtgttagttgttggtgttgggaatggcacaaagatgctcagtacaatgttgtctggttct
aagaaatacgttgctgtaggggaactggggaaagcaacagatagccttgatgccactggc
agtgtgattctggagaaagactttgaacacataaccaggttggacattgaggagaaactg
aaagctttcactggtgacataatgcaagttcctccgctctactctgcgctgaaaaaggac
ggccagcgcctgtctgtcctgctgaagaaaggtcacaaggttgaggccaaaccagccaga
ccggtcactgtgtacaaactgaccctgcaagagttcaagcctcctctcttcactcttgat
atcgagtgcggtggtggattttatgtccggagcttggtggatgacctgggaaaagcgctg
tcgtcctgtgcccatgtgaaggaactgatccggaccaagcagggtcagttcaccctggag
gagcacgccctaccccaggaccagtggacactggaacacatccggcgctctctgcagccc
tgctccgactcggagcctccggacgccgacacctga
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