| Entry |
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| Symbol |
col11a1
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| Name |
(RefSeq) collagen alpha-1(XI) chain isoform X1
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| KO |
| K19721 | collagen type V/XI/XXIV/XXVII, alpha |
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| Organism |
pflv Perca flavescens (yellow perch)
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:pflv00001]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
114549069 (col11a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:pflv00536]
114549069 (col11a1)
Glycosaminoglycan binding proteins [BR:pflv00536]
Heparan sulfate / Heparin
Extracellular matrix molecules
114549069 (col11a1)
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
22:complement(8372632..8474303)
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| AA seq |
1808 aa
MEMQKWSTRWKTKRWFMDSTVTVLITLTLVLQATNIRAAEPVDVLKVLEFQNYPEGVTKT
SGLCTNRRASKPDSAYRVAKQIQISAPTTQLFPGGVFPEDFSILTTVRPKSGLQSFLLSI
YNQQGVQQLGVEVGRSPVFLYEDHTGKPAPEDYPLFRTLNLADGKWHRVAISVEKKTVTI
IVDCKKKIIKPLLRSDHGSINTNGITVFGTRILDEDIFQGDIQQLLIVADPKAAYDYCEH
YSPDCHTPHSDSLQAQEPEEEYTTDLDYSQFYDYSEGATDTIPTDEYSEPQPNNVGDYNT
DFDYGTVDGTQTQAPFPTSGPSEAVEEDVVGAYVTEATPIAPESIVPETVDNLDTGAEAY
DLKEYTLKEYDLGEIDNRLYDYGAYDEYGTALSKPTGTYDDEVGPGVAAETDVSESTVAG
AGGAFGQKGEKGEPAVIEPGMLIEGPPGPPGPAGLPGPSGLQGPPGPAGDSGDRGPPGRA
GLPGADGLAGPPGTMLMLPFRFGGDGEKGPVVSAQEAQAQAILSQARLAMRGPSGPMGLT
GRSGPVGLPGSPGLKGEYGDPGPQGPRGIQGPAGQPGKPGKRGRAGADGSRGMPGESGSK
GDRGFDGLPGLPGEKGHRGEPGPMGPTGASGEDGQRGEDGEIGPRGLAGESGPRGLLGPR
GPPGPPGSPGVAGVDGPPGPKGNMGPQGEPGPPGQQGIPGTQGLPGPQGPIGPPGEKGPQ
GRSGLPGLPGADGPPGHPGKEGPPGEKGALGPSGPQGPIGYPGPRGVKGADGVRGLKGGK
GEKGEDGFPGFKGDMGLKGDRGELGIVGSRGEDGPEGPKGRAGPNGESGPIGPAGEKGKL
GVPGLPGYPGRQGPKGSSGFPGFPGANGEKGARGIAGKPGPRGQRGPTGPRGGRGARGPT
GKPGPKGTAGNDGPPGGPGERGPQGPQGPVGFSGPKGPPGPAGKDGLPGHPGQRGETGFQ
GKTGPPGPGGVVGPQGPTGETGPVGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGSS
GKDGPPGLRGFPGERGLPGATGPAGLKGGEGPQGPPGPVGSPGERGPAGSAGPIGLSGRP
GPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPQGPPGEDGDKGEVGEPGQK
GSKADKGEQGPPGPAGLQGPIGAPGPAGADGEPGPRGQQGMFGQKGDEGSRGFPGPPGPI
GLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPSGADGPQGPPGGVGPMGSVGEKGEQ
GEAGNPGPPGEAGTGGPKGERGEKGEAGPPGAAGPAGAKGPPGDDGPKGNPGPVGFPGDP
GPPGEPGVAGTDGESGEKGEDGEAGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEK
GAKGEAGAEGPAGKTGPVGPQGPSGKPGPEGLRGIPGPVGEQGLPGSPGQDGPPGPMGPP
GLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGGKGDSGLGGSSGPL
GPPGPPGLPGPQGPKGSKGSSGPAGAKGDTGTIGPPGPPGPPGEVIQPLPIQSPKKTKRS
SGMQSDAAAAIMDYGEGMEDIFGSLNNLKQDIERMKYPMGTQNNPARTCKDLQLCHPEFP
DGEYWIDPNQGCSGDSFKVYCNFTAGGETCIYPDKKSNGVRISSWPKEVPGTWFSEFKRG
KILSYVDADGNSINMVQMTFLRLLTASARQNFTYSCHQSVAWHDATSDSYSKAMRFLGAN
DEEMSYDNNPYIKALSDGCATRKGYGKTVMEINTPKIDQVPIIDVMLTDFGDPNQKFGFE
VGPICFLG |
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| NT seq |
5427 nt +upstreamnt +downstreamnt
atggagatgcaaaagtggtccacaaggtggaaaacgaaaaggtggtttatggattccact
gtaaccgtactcatcactttaaccctggttctacaggctaccaatatcagagcagcagag
ccagtggatgtgctaaaagtattagaatttcaaaattaccccgaaggagtgacgaaaaca
tcaggactttgcacaaacagaagagcatcaaagccggactcagcttacagagttgccaag
cagatccagatcagtgcccccaccacacagctattccctggaggtgtttttcctgaggac
ttctccatcctgactacagtgcgccccaaatcaggcctccagtccttcttgctgtcaatt
tacaaccagcagggagtccagcagctgggcgtagaagtgggacgttcacctgtctttctg
tatgaggatcacactggcaagccagcaccggaggactaccctctgttccgtactctcaac
cttgctgacggaaagtggcatcgtgtggccatcagtgtggagaagaaaacggtcaccatc
attgtagactgtaagaagaagatcatcaagcctctcctcaggagtgaccatggttccatc
aacaccaatggcattaccgtgttcggcaccaggatcctggacgaggatattttccagggt
gacatccagcaacttctgattgtggctgatcctaaagcagcatatgactactgtgaacat
tacagccccgactgtcacaccccccacagtgattccctgcaggcccaggagccagaggaa
gagtacactactgatttagattactctcagttctatgattactctgagggagccacagac
accattccaaccgatgagtattctgaaccacagccaaacaatgtaggagattacaataca
gactttgactacggaactgtagatggtactcaaactcaggctccctttcccacgagtgga
cccagtgaggctgtggaggaggatgttgtcggtgcatatgtcaccgaggccactcccatt
gctccggagtccattgtcccagaaacggtggacaacttggacactggtgcggaagcatat
gaccttaaggaatataccctaaaggagtatgacttgggcgagattgacaacaggttgtat
gattacggagcatatgatgagtatggcacggccctgtccaaacccacgggaacctatgat
gatgaggtggggcctggggttgctgctgaaactgacgtttctgagagcaccgttgctggg
gctggaggagccttcggccagaagggagaaaaaggcgagccggctgtaattgagcctggc
atgctgattgaaggaccaccaggcccccccggcccagctggtcttccaggtccctcaggt
ctacaaggacccccaggccctgctggagattctggtgacaggggtcctcctggtcgtgct
ggtctgcctggtgctgatggtttggcagggccccctggtaccatgctgatgctgccattc
cgttttggtggcgatggtgagaagggtccagtggtgtcggcccaagaagcccaagcccag
gccatcctgtcccaggccagactggctatgaggggaccctcagggccaatgggtttgaca
ggaagatctggaccagtgggtctgcctggttctcctggactgaaaggtgaatatggagac
cctggtcctcagggtccccggggcatccaagggcctgcaggacaacctggcaaacctggc
aagaggggtcgtgccggagctgacgggtcccgtggaatgcccggagagtcaggctccaag
ggtgacagaggcttcgatggactgcccggactgcctggtgaaaagggacacaggggggag
ccagggccaatgggacccacaggtgcctctggagaagatggacagagaggcgaggatgga
gagattgggccccgaggattagctggcgagagtggtcctagaggtttgcttggacctcgt
ggtcctccaggaccccctggatctcctggtgttgctggagttgacgggcctccaggtccc
aaaggaaacatgggaccgcaaggagaaccaggcccacccgggcagcagggaatccccgga
acacagggtcttcctggtcctcaaggccctatcggaccacctggtgaaaaaggaccgcag
ggcaggtcggggttgcctggactacctggagctgatgggcctcctggtcatcctggtaag
gagggtccacctggagagaaaggagccctgggtccgtcaggcccacagggtcctattggt
tatcctggccctcgtggtgtcaagggtgctgatggtgttcgtggtctcaaggggggaaag
ggagagaagggcgaggatggtttcccaggtttcaagggagacatgggactcaaaggagac
cggggtgagcttggcatagttgggtcccgtggagaggatggtcctgagggtcccaaaggc
cgagctggccccaacggagagtcaggtcccattggtcctgctggagagaagggtaaactg
ggcgttccaggactgccaggttatccaggaagacaaggacctaagggctcgagtggtttc
cctgggttccctggagccaatggcgagaaaggagctaggggcattgcaggcaaacctggg
ccaagagggcaaagaggtccaacgggtcctcgtgggggtcgaggagccagaggtccaaca
ggaaaacctggtcccaagggcacagcaggcaacgatggccctccaggcgggcctggtgag
agagggcctcaaggacctcagggaccagtgggcttctctggaccaaagggcccccctgga
ccagctggaaaggacgggctgcccgggcaccctggtcagcgtggagagacgggtttccaa
ggaaaaactggcccaccaggcccaggaggtgtcgtcgggccccagggaccaactggagag
actggccctgttggtgagagaggccaccctggaccccctggcccaccgggagagcagggt
cttccaggtgctgctggcaaggagggagctaagggagaccccggacctcagggatcctct
ggtaaagacggtccccccggccttcgaggcttccctggagaaagaggtctacctggtgcc
acgggcccagcaggtctgaagggaggagaggggccccagggtccacctggtcctgttggt
tctcctggtgaaagaggtcctgctggttcagccggtccgattggcctgtctggtagacct
ggccctcagggtccccctggtcctgctggagagaagggagcacctggtgagaaaggacct
caaggtcctgctggtcgtgatggcgtccagggtcctgttggtctgcccggacctgctgga
cctcagggtccacctggagaggatggtgacaagggagaggttggagagcccggtcagaag
ggaagcaaagccgacaagggagaacagggtcctcctggcccagctggtctccaaggtccc
ataggtgccccaggtcctgctggagctgatggagagcctggtcccagaggtcagcagggt
atgtttggacagaaaggagatgaaggttccagaggtttccctggaccccctggtcccatc
ggtctgcaggggcttcctggacctcctggtgagaagggagagaacggtgatgttggcccc
atgggccctcctggtccccctggtcccagaggtcctcagggtcctagtggagctgatggt
ccacaaggccctccaggtggtgtgggccccatgggatctgtgggtgagaagggtgaacaa
ggtgaggctggaaacccaggaccacccggagaggctggaactgggggacctaaaggcgaa
agaggagagaaaggagaggctggaccccctggagctgctggacctgctggtgccaaagga
ccccctggagatgacggtccaaagggcaaccctggtcctgttggattccctggagaccct
ggtcctcctggtgagccaggtgttgctggcactgatggagaatcaggagagaagggagag
gatggtgaggctggtcagccgggacctccaggtccatcaggagaagctggcccaccggga
ccacctggcaagagaggacctccgggggctgctggtgcagagggcagacaaggagagaag
ggcgctaagggtgaggcaggtgccgagggtccagcaggaaaaacgggaccggttggaccc
cagggaccttcaggaaagcccggtccagagggtctgcgtgggatccctggccctgtcggt
gaacaaggactgcccggctccccaggacaggatggtccacctggccccatgggtcctcct
ggtcttcctggtctgaaaggtgaccctggatctaaaggtgaaaagggtcatccaggtttg
attggcctgatcggaccccctggtgagcaaggagagaagggagaccgaggtttgcccggg
ccccagggttctcccggtggcaagggcgacagtggtctcggtggttcttccggtcctctt
ggtcccccaggcccccccggtctgcctggtcctcaaggtcccaagggatccaagggttca
tctggtcctgctggtgcaaagggagacactggtacaattggtcctcctggtcctcctggt
ccaccaggtgaagttatccagcccctgcccatccagtcacccaaaaagaccaagcgctcc
agtggcatgcagtcagacgcagccgctgccatcatggactacggcgagggaatggaggac
atcttcggctcactcaacaacctcaaacaggacattgaacgcatgaaataccccatgggc
acacaaaacaaccctgccaggacgtgcaaagatctgcagctctgccacccagagttccct
gatggcgaatactggattgatccgaaccaaggctgctctggggattccttcaaagtctat
tgtaacttcaccgccgggggcgaaacctgcatctatccagataagaagtctaatggagtc
agaatatcttcatggcccaaagaagtccctgggacatggttcagtgaatttaagcgtggg
aaaatactttcctatgttgacgcagatggaaactcaataaacatggtacagatgaccttc
ctcagactactgacagcctctgccaggcaaaacttcacctacagctgccaccagtctgtg
gcgtggcacgacgccaccagtgacagctacagcaaggcgatgcgcttcctgggcgccaac
gatgaggagatgtcctatgacaataacccttacatcaaggccctttcagacggctgtgcg
acgaggaagggctatggaaagactgtgatggagattaatactcccaaaatcgatcaggtt
ccaatcatcgatgtcatgttgactgactttggagaccctaaccagaagtttgggtttgaa
gttgggcccatctgcttccttggctaa |
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