Perca flavescens (yellow perch): 114549115
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Entry
114549115 CDS
T07494
Symbol
topbp1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
pflv
Perca flavescens (yellow perch)
Pathway
pflv03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pflv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
114549115 (topbp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pflv03032
]
114549115 (topbp1)
03400 DNA repair and recombination proteins [BR:
pflv03400
]
114549115 (topbp1)
DNA replication proteins [BR:
pflv03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
114549115 (topbp1)
DNA repair and recombination proteins [BR:
pflv03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
114549115 (topbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
BRCT_TopB1_SLF1
ECT2_BRCT0
Motif
Other DBs
NCBI-GeneID:
114549115
NCBI-ProteinID:
XP_028425090
LinkDB
All DBs
Position
22:complement(19188716..19205095)
Genome browser
AA seq
1516 aa
AA seq
DB search
MSKGDKEGFIVKFVECNAKGQNKEYAVKAYEAILELQSDKYLKTVDEDAVLQMDQKDKSL
FVFSSFTTPAFQHCKKLGCRVVSPLVVLYCLQQQHCVPKAEKPVYNMAMADITISCTSLD
KATRTEVMDLVQLMGGRVYLDLNVSVTHLIAGEVGSKKYLVAASLSKPILLPTWVKACWE
KSQDSLFRYTDLPIEDYLCPVLRGCTICVTGLSSTERKEVQRLCDQHGANYTGQLKMNEC
THLIVSEPTGQKYECARKWNVYCVSLHWLFDSIEKGFCQDETRYAVERNASKTTRPHTST
PTGTNRKEEGPSLLGLSHISVNASMTVNDTALTNATVSRLEAPDPIDTLDLTVCPADDIL
DGCKLYLCGLPGKKLEKLRRLVNSAGGLRFNQPSEELTHVVMGELDHDLKSFLSKATHRP
HVVTVQWLLDSFSKGSQLPEAGYLHPDCLPTTPAAVFVPARHTPASRHSDGPPAASPSTP
RQTRAEEDLLSQYMDDDPTVVDMAQPAEVNSRKSISTSAEPWAPNHSRGPEPDSTLQEAS
EAGLFFGKCFLLVGFGTEEEAQLSLLVTENGGRVLMGRTRVVADYAVVPLLGCSVEATVD
EVVTDTWLAMCVEKESVLQLSSNPLFTPVPVMDGRFPLKDCVLSVSQFTGAERESLVELA
KHLGANVQDYFVRLANQKKGMLASTHLVLQSPEGTKYQAAKKWGFPAVTMRWILESARTG
QRAEEGRFLVDLPPSPERDDESFVGGSQKPAMPPPACLSPEIPLLGLQSGKAVTPLDLGR
FQSKVFHSVLDEMKPKQDISTPKQNQEGGRRNPFQKEASLQLDTPSRFLSRDQLFRPSFN
VKDVLGDLETPGGRTKPGERVETPLTDVVSRTLQVALANSSRSTASDMQAISASPQFAKT
TEKEVAEKEAGPLTGVVICVGKKLSKMQGELNAIAASLGADFRWSCDDTVTHYIYQGRVG
DNTREYRGVKERGLHVVSQYWLQACAEEQSHVPESLYPFTYNPKMSLNLSQVPNSSQRSP
PFTRTQLKEISEAKDNKCDHIATEEATSRRVSDGSVDQEEMNETADRTDISETLEMRENL
QRQLQEIMSATKLTTGRRTSVRLTRMGSGGADSGPHTPDGSRFGRCGSRRTLEALRVTRE
AAMDINTEPSQSEQIVWDDPTAREERAKLADNLQWPGSPSQHSEPVAPPPPPIIENGSQF
RDSMTDSELVEMAACDVINQHMGQRVSTAPTEKRGNDILTPNAPSIAFPIANPPVVPELQ
EERKEEKQPPRFQLSSLSPQERIDYSHLIEELGGVVLDRQSFDPSCSHIIVGTPLRNEKY
LAAMAAGKWILHRSYLEACRSVGRFIQEDEYEWGSSSILDALPSINSQQRRLALAAMRWR
KTLQGCSEQGGAFSGWTVMLNIDQSRESGFRRLLQSGNAKVLPSPSPSLYKETTHLFADF
VRLKPGDFRVNVSEANSLGVTCLKPEYIADYLMQEPIPPIELYYLTEASSEEAPGTPSRK
RKATADNSRLKKTRLN
NT seq
4551 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaaggagacaaagaaggcttcattgtgaagtttgtggaatgtaacgctaaagga
caaaacaaagagtatgctgtcaaggcttatgaggccattttggagctgcagtctgacaag
tacttgaagaccgtcgatgaagatgcagttttacagatggaccagaaggacaagtctctg
tttgtcttcagcagcttcactacccccgcctttcagcactgcaaaaagcttggctgccga
gtggtgagtccactggtagtgttgtactgcctgcagcagcagcattgtgtccccaaagca
gagaagcccgtctataacatggccatggctgacatcactatttcctgcaccagtctggat
aaagcaacccggacagaggtgatggatctggtgcaactcatgggtggacgggtctatctt
gacttaaatgtatctgtcacacacctgatagcaggagaggtgggcagcaagaaatacctg
gtagctgccagcctgagtaaacccatcctgctgcccacatgggtcaaagcatgctgggag
aaatctcaggacagtcttttcaggtatactgatctacccattgaggactatttgtgccct
gtgctgcgtggctgcactatttgtgtgacaggcctctccagcacagaacgtaaagaggtg
cagcgactctgtgatcagcatggagccaactacactggtcagctcaaaatgaatgagtgt
acacacctcattgttagtgagccaacaggtcagaagtacgagtgtgcaaggaagtggaat
gtgtattgcgtgtctctgcactggctgtttgacagcatagaaaagggcttttgtcaagat
gagaccaggtacgctgtggagcgtaacgcatcaaagaccacacgaccgcacacttccact
cccactggcaccaacaggaaggaggagggaccatctctgttgggcttgagccacatctct
gtcaatgctagcatgacagttaatgacacagcgctcaccaacgccaccgtcagccgcctg
gaagctccagaccccatagatactctggatctcaccgtctgcccagctgatgatatactg
gatggctgtaagctgtatctgtgtggcctgccagggaagaaactggagaagctgcggcgt
cttgtgaactctgcaggaggtctgcgcttcaaccagcccagtgaggaactcacacatgtg
gtcatgggagagctggaccacgacctcaagagttttctgtccaaagcaacacatagaccc
catgtagtaacagtgcagtggctgctggacagtttcagcaaaggcagtcaactcccagaa
gcaggttacctccaccccgactgtctgcccacgactccggctgctgtatttgtgcctgcc
cgtcacactccggcctcacgccattcagacggtccccccgcagccagtcctagcactcct
aggcaaacaagagccgaggaagatctgctgtctcagtacatggatgatgaccctacagta
gtggacatggcccaaccagcagaggtcaacagcaggaagtccatcagtacatctgctgag
ccttgggcgccaaaccactccagaggaccagagccagactcaaccctgcaggaagccagc
gaggcaggcctattttttgggaaatgtttccttcttgtgggctttggcactgaggaagaa
gcccagctctccctactggtgacagaaaatggaggcagggtgctgatgggccgtacgcgt
gtcgtggcagactatgcagtggtcccactgttgggctgttcagtggaggccacagtcgac
gaagtggtcactgatacctggctggccatgtgtgtggaaaaggagtctgttctgcagctg
tcctccaaccctttgttcacacctgttcctgtgatggacgggcgtttccctctcaaagat
tgcgttctctctgtcagccagttcaccggagcagagagggagtctttggtggagctggcc
aagcaccttggagccaatgtccaggattactttgtgcgcctggcgaaccagaagaaaggg
atgctggccagcactcatctggtgctgcagagccctgaaggcacaaaataccaggcagca
aagaaatgggggtttccagccgtcaccatgcgctggatactagagtctgctcggaccggc
cagagggcagaggagggacgttttctagttgacctgccaccctccccagagagggatgat
gagagttttgttggtggttcccagaagcctgccatgcctccaccagcctgtttgtctcca
gagatccctttgctgggtctccagagcggtaaggccgttaccccgctggatttgggtcgc
ttccagagcaaagtgttccactccgtgttggatgaaatgaaacccaaacaggacatcagc
acccccaaacaaaaccaggagggcggcagaaggaacccctttcagaaggaagcctccctg
cagctggacactccctctcgtttcctcagcagagaccagctgttcaggccctccttcaat
gtcaaggatgtactaggagacttggagaccccagggggaagaaccaaaccaggagagagg
gtggagactccactgactgatgttgtcagcaggactctgcaggtggctctcgccaacagc
tcccgaagtaccgcctcagatatgcaagccatctctgctagcccccaatttgccaagaca
actgagaaggaggtcgcggaaaaagaagccggccctctgactggtgttgtgatctgtgtg
ggaaagaagctgagcaaaatgcagggtgaactcaatgccattgctgcctcgcttggagca
gacttcaggtggtcttgtgacgatacagtgacacactacatctaccagggccgtgtgggg
gacaacacccgggaatacagaggagtgaaggagagaggactgcatgtggtctcccagtac
tggctgcaggcttgtgctgaggagcagagtcacgtcccagagtctctgtatcctttcacc
tacaaccccaagatgagcctaaacctcagccaggtgcccaacagctctcagaggtctcct
ccttttacacgaacccaactaaaagagatctctgaggcaaaggacaacaagtgtgatcac
attgccacggaagaagccacatcacgtcgcgtaagcgatggaagcgtagatcaagaagag
atgaatgaaactgcagatagaactgatatttcagagactctagaaatgagagagaacctg
caaagacagctccaggagatcatgtcagccaccaagctgacgacagggaggcgtacctca
gtccgacttaccaggatgggatcaggaggagccgactcgggcccccacacacctgatggg
agtcggttcggacgctgcgggagcagacgtactctggaagctctgagggttaccagagaa
gcagctatggacataaacacagagccatctcagagtgaacagatagtttgggatgaccct
acagccagggaggagagggccaagctggctgataatttacagtggcctggtagtccctca
caacactctgagcctgtcgcacctccacctcctcccattatagaaaacggctctcagttc
agggactccatgaccgactctgagctggtggagatggctgcttgtgacgtcatcaaccag
cacatgggccagagagtctcaacggctccaacagagaagcgtggaaatgacattctcact
cccaacgcccccagcatcgccttccctatcgccaaccccccagtagtaccggagcttcag
gaggagcgtaaggaagaaaagcagccacccagatttcagctgtcctccctcagccctcag
gaacgcattgattacagtcacctaatagaggagcttggtggtgtagtcctggacagacag
tctttcgaccccagctgctcgcacatcatcgtagggactcctctgcgcaacgagaagtac
ctggcagcaatggcagcgggcaaatggatcctgcaccgctcgtacctggaggcctgccgc
tctgtgggtcgcttcatccaggaggatgagtatgagtggggcagtagctccattctggat
gcgttgccctccatcaactcccagcagaggagactggcgttagctgccatgcgctggaga
aaaaccctgcagggatgctctgagcaagggggagccttcagtggatggacggtcatgctg
aacatcgaccagagcagagaatcaggcttcaggcggttactgcagtctggcaatgcgaag
gtcctgccgagtccctccccttccttgtacaaggagaccactcacctgtttgcagacttt
gttcggctgaagcctggagacttcagggtcaatgtgtcggaggctaactccctcggagtc
acatgcttgaagccagagtacatcgcagactacctcatgcaggagccaatcccgcctatc
gagctgtactacctgactgaagcttcctctgaagaagctccaggcactccgtcacgtaag
cgcaaagccacagcagacaactcccggctgaaaaaaacacgtcttaactaa
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integrated database retrieval system
