Perca flavescens (yellow perch): 114549301
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Entry
114549301 CDS
T07494
Name
(RefSeq) transcription factor Sox-17-alpha-like
KO
K04495
transcription factor SOX17 (SOX group F)
Organism
pflv
Perca flavescens (yellow perch)
Pathway
pflv04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
pflv00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
114549301
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pflv03000
]
114549301
Transcription factors [BR:
pflv03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
114549301
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
Sox17_18_mid
HMG_box_2
HTH_24
Motif
Other DBs
NCBI-GeneID:
114549301
NCBI-ProteinID:
XP_028425351
LinkDB
All DBs
Position
22:18349503..18351521
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AA seq
400 aa
AA seq
DB search
MSSPDAGYASDDQTQARCTMSVMMPGMGRCQWVDPISPLGDTKVKNEPCASSSGSQNRGK
TEPRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALPVTEKQPFVEEAER
LRVQHMQDHPNYKYRPRRRKQVKRIKRLESGFLVHGVSDHHGSSMPGDGRLCVESMGLGY
HEHGFQLPPQPLSHYRDAQALGGPSYETYSLPTPDTSPLDAVESELTFFPQHSQEDCHMM
PAYAYHSQAAEYQPQESLSNHHSNPILHRHPASASEQPPQPATLPPSYMGCPNPLAMYYT
QHCSHSQPKRHPGGAGQLSPPPDSHPHSTDSVEQMHHSELLAEVDRSEFEQYLNSSSARA
DMTGLSYGQHEAGMQGPESLISSVLSDASTAVYYCSYNNS
NT seq
1203 nt
NT seq
+upstream
nt +downstream
nt
atgagtagtcccgatgcgggttacgccagcgacgatcagacccaggcaaggtgtacgatg
tcagtcatgatgcctggaatgggacgctgccagtgggtcgaccctatcagtcctctcggg
gacaccaaagtaaaaaacgagccgtgcgcctccagctccggcagtcagaatcgcggcaag
accgaaccgcggatccgacggcccatgaacgcgtttatggtctgggcgaaggatgagcgc
aagagactggcgcagcaaaacccggacctgcacaacgcggagctgagcaaaatgttaggg
aaatcatggaaagcccttcctgtcacagaaaagcagccctttgtggaggaggccgagcgg
ctgcgggttcagcacatgcaggatcaccccaactacaagtaccggccgcggcggcggaag
caggtgaagaggattaagaggctggaatctggctttctagtccacggcgtgtccgatcac
catggctcgtctatgcccggggatggcaggctgtgtgtggagagtatgggccttggctac
cacgagcatggcttccagcttcctccacagccgcttagccactaccgagatgctcaggct
cttgggggcccttcttatgaaacctacagcctccctacccctgacacttctcctctggac
gctgtagagtccgaactcacgttcttccctcaacattcacaagaggactgccacatgatg
cctgcatacgcttaccactcccaggcggcagagtaccagccccaggagtccctctccaac
caccacagcaaccccatcctgcaccgacaccctgcctcagcttcagagcagcccccacag
cccgccacccttcccccttcctacatgggatgccctaaccctctggccatgtattacacc
cagcactgcagtcacagccagcccaaacggcatcccggtggggcaggacagctctccccc
cctcctgactcccaccctcactcgacagacagcgtggagcagatgcaccactctgagctg
ctggccgaggtggaccgcagcgagtttgagcagtatttgaactcctcttcggcgcgtgcg
gacatgacaggcttgtcgtacgggcaacacgaggctggcatgcaaggacctgaaagcctc
atatcatctgtgctgtcagacgccagcacagctgtgtattactgtagctacaacaactcc
taa
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