Perca flavescens (yellow perch): 114549362
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Entry
114549362 CDS
T07494
Symbol
pan3
Name
(RefSeq) PAN2-PAN3 deadenylation complex subunit PAN3 isoform X1
KO
K12572
PAB-dependent poly(A)-specific ribonuclease subunit 3
Organism
pflv
Perca flavescens (yellow perch)
Pathway
pflv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pflv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114549362 (pan3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pflv03019
]
114549362 (pan3)
Messenger RNA biogenesis [BR:
pflv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
114549362 (pan3)
mRNA degradation factors
3'-5' decay
Pan complex
114549362 (pan3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pan3_PK
zf-CCCH
zf-CCCH_4
zf_CCCH_4
Torus
zf-CCCH_2
Motif
Other DBs
NCBI-GeneID:
114549362
NCBI-ProteinID:
XP_028425427
LinkDB
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Position
22:complement(15112391..15130689)
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AA seq
807 aa
AA seq
DB search
MHLSLIISGGGSSGAMNSGLPASAAPLGGAGIPNVKVKFCRYYAKDKTCFYGDECQFLHD
DPSMGSLPLHGGGSPVPLSMAGGGGTPAVYSLGSSAAACPGGVGTGVSKKSETLGPAGTS
LEGQLLTIPGMEGATLSDANLTNSYFSSSFIGVNGFGSPAESKYSMMQRMTTSSSSPSLL
NDGAKNFSHSTHDPVNSPTSSLFSDFGALSISQRRKTPNPAASEFIPKGAPRMATMAQST
VQAFPSPLFPHPGLSSSTAAALAPGMSLSAGSSPLHSPKITPHTSPAPRRRSHTPNPANY
MVPTTAADQGTHIIQKETVGGTTYFYTDNTPAPMAGMVFPTYHIYPPTAPHVAYMQPKAN
APSFFMADELRQELINRHLITMAQIDHSENPDVPSEVDSYHSLFPLEPLPPPNRMQKTSN
FSYITSCYKAVNSKDDLPYCLRRIHGFRLVNTKCMMLVDMWKKIQHSNSVTLREVFTTKA
FGDHSLVFSYDFHAGAETMFSRHFNDPAADSYFTKRKWGQHEPPPPRQHAGLLPESLIWA
YIVQLSSALRTIHTAGLACRVMDPSKIVITGKTRLRVNCVGVFDVLTFDSSQTNHLALMP
QYQQADLVSLGKVVLALACNSLAGIQRENLQKAMELVSINYSSDLKNLILYLLTEQSRLR
SVNDIMPMIGARFYTQLDASQMRNDVIEEDLAKEVQNGRLFRLLAKLGTINERPEFQKDP
TWSETGDRYLLKLFRDHLFHQVTEAGTPWIDLSHIVSCLNKLDAGVPEKISLVSRDEKSV
LVVTYSDLKRCFDSTFQELQAAASGSL
NT seq
2424 nt
NT seq
+upstream
nt +downstream
nt
atgcatcttagccttataatcagcggtggcggcagcagcggtgccatgaacagtggactc
ccagcttcagctgctccgctcgggggtgccgggataccaaatgtgaaggtgaagttttgc
cgatattacgcgaaagacaaaacctgcttttatggagacgagtgtcagtttctgcatgac
gatccgtccatgggaagcctgccgctgcacggcggcggtagccccgtcccgttgtccatg
gctgggggtggcgggacgccagcggtgtattcccttggcagctccgcggcggcctgcccg
ggtggcgtggggactggtgtgtccaagaaaagcgaaacattgggccctgcaggcacgtct
ctggaggggcagctattaaccatcccagggatggagggcgcaaccctgagcgatgccaat
ctcacaaactcgtacttcagcagcagctttattggggtcaatgggtttggaagcccagca
gagtctaaatactcaatgatgcagcgaatgactaccagcagcagctctccaagtctcctc
aatgatggtgccaaaaactttagccacagcactcatgatccagttaactccccgacatct
tcactgttcagtgattttggtgctcttagcatttcccaaaggagaaagactccaaaccct
gcagcaagtgagttcatccctaagggagctccacgaatggccaccatggctcagtccact
gtccaggcatttccctcgcctctcttcccacaccctggccttagcagctcaacagctgct
gcacttgctcctggcatgtctctgtctgccggatcttctcctctccactccccaaaaatc
acaccgcacacctcacctgctcctcgtcggcgcagtcacaccccaaaccctgccaactac
atggttcccaccactgcagctgaccagggtactcacataatccagaaagagactgtaggg
gggaccacctacttctacacagacaacaccccagcaccaatggctgggatggtgtttcct
acctaccatatctatcctcccactgcgccccatgtggcttacatgcagccaaaagccaac
gccccgtccttcttcatggctgatgaacttcgacaggagttgataaacagacatctgata
accatggcccagattgaccattcagagaacccagatgtaccatctgaggtggacagctac
cacagcctcttccccctcgagcccctccccccaccaaaccgcatgcagaagaccagcaac
ttcagctacattacctcctgctacaaggcggtcaacagcaaggatgacctgccttactgc
ctgaggaggatacacggtttccgccttgttaacaccaagtgcatgatgctggtggacatg
tggaagaagattcagcactcaaactctgtaacactgagggaggtcttcaccacaaaggcc
tttggagaccactcgttggtgttctcctatgacttccatgcgggtgcagaaaccatgttc
agcagacactttaatgacccagcagcagactcgtactttactaagaggaagtggggacaa
catgaacccccaccgccacggcagcatgcaggtctgctccccgagtctctgatatgggcc
tacattgttcagctcagctcggccctacgcaccatccacactgccggactggcctgccgt
gtcatggaccccagcaagattgttattactggcaagaccaggttacgggtgaactgtgtt
ggggtgtttgatgtcttaacttttgacagcagtcagaccaatcatcttgccctaatgcca
cagtaccagcaagcagacctagtgtcactgggcaaggtggtgctggcgttggcatgtaac
tccctggctggcattcaaagggagaacctgcagaaggccatggagctggtgtctatcaac
tactcttcagacctcaagaatctcattctgtatctgctgactgaacagtctcgtctgcgc
agcgtcaatgacattatgccaatgattggagctcgattctacacacaactggatgcatcg
cagatgagaaatgatgttattgaggaggacctagccaaggaggtgcaaaatggccgtctc
ttccgcctgttggccaaactgggcaccatcaacgagcggccagagtttcagaaggaccca
acgtggtcggagacaggcgaccgctacctgttgaagcttttccgggatcacctgtttcac
caggtgacagaagctgggacgccatggatcgacctcagtcacatcgtctcctgtctcaac
aaactggacgcgggcgttcctgagaagatcagcctggtatctcgggatgagaaaagcgtc
ctggttgtgacctactcggacctgaagcgctgcttcgacagtaccttccaggagctgcag
gctgcagcctccggctctctgtag
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