Perca flavescens (yellow perch): 114550350
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Entry
114550350 CDS
T07494
Name
(RefSeq) CCR4-NOT transcription complex subunit 4-like
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
pflv
Perca flavescens (yellow perch)
Pathway
pflv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pflv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114550350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pflv03000
]
114550350
03019 Messenger RNA biogenesis [BR:
pflv03019
]
114550350
04121 Ubiquitin system [BR:
pflv04121
]
114550350
Enzymes [BR:
pflv01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
114550350
Transcription factors [BR:
pflv03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
114550350
Messenger RNA biogenesis [BR:
pflv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
114550350
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
114550350
Ubiquitin system [BR:
pflv04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
114550350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
zf-C3HC4_3
Sporozoite_P67
zf-C3HC4_2
zf-UDP
zf-RING_2
zf-CCCH_2
Nup35_RRM_2
CLEC16A_C
DZR_2
zf-C3HC4
Rtf2
Torus
Motif
Other DBs
NCBI-GeneID:
114550350
NCBI-ProteinID:
XP_028426859
LinkDB
All DBs
Position
23:25158762..25186771
Genome browser
AA seq
750 aa
AA seq
DB search
MSRNPGVKDDLMECPLCMEPLEIDDVNFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
PEDPAVYKPLSQEELQRIKTEKKQKQNEKKQKITENRKHLASVRVVQRNLVFVVGLSQRL
ADPEVLRRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
VDGRTLKASLGTTKYCSYFLKSMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
LQDLYKSNPTFLQSPAVSGDRPKAKGNSLQSKDGLSSDPGRSPPSEGSDCEHLTPAGPQP
DPSLDPVPALCPFSSQLASPSHTLTDIISIGNGDTSQLLRGGSESPSPPPGLSKSSLLLP
ISVPGHTARSPFEAAPAESQSLFSDNSNFRHPNPLPSGLSGFPSSPHSNADWPTAPEPQS
LFTSDTMPVSSSTDWQAAFGFGSSNQQQDDDLGFDPFDITRRALADLIEKELSVEDSFGS
AHRTLGTLGGLPPSQHFPQHQHPRRADYSSFSFPSHPPSSASSASCGSWMASTSSRRNFV
HLNHTVSVTAFPSHSNFLDLTVLPGHHSSGLGGIPITESSSCGESLNVKEWQDGLRALLP
NININFGGLPNSTSSSLSSSSSSSSSSVQHAGAPGLPHSLCWDRTARWMDPAIITGIPTC
AGNGLDSLQDDNPPHWLKSLQTLTEMDAPPSSVSQNGSLGSQPPPHRAGWAHYPAPSSQF
HSPPPGFQTAFRPPTQTQTDLLQSAAIDRH
NT seq
2253 nt
NT seq
+upstream
nt +downstream
nt
atgtcccggaaccctggggtgaaggacgacctgatggagtgcccgctgtgtatggagccg
ctggagatcgatgacgtcaacttcttcccctgcacctgtggataccagatctgtcgcttc
tgctggcatcgaatcaggacggacgagaacggcctctgtcccgcctgcagaaagccgtac
ccagaagacccggcggtgtacaagccgctgtcgcaggaggagctgcagaggataaagacg
gagaagaagcagaagcagaacgagaagaagcagaagatcaccgagaacagaaagcatctg
gccagcgtccgggtggtgcagagaaacctggtgtttgtggtggggctatcccagaggctg
gctgaccccgaggttctgaggaggccagaatattttggcaagtttgggaagattcacaaa
gtggtgatcaacaacagcacatcgtacgctggctcccagggtcccagtgccagtgcctac
gtcacatatatacgttcagaagacgctctccgagcaatccagtgtgtcaacaacgtagtg
gtcgacggcaggacgctgaaggcttctttaggaactacaaaatactgcagttacttttta
aagagcatgcagtgccccaaaccagactgcatgtatctacacgagctgggggatgaggct
gccagttttactaaagaggagatgcaggcaggaaagcatcaagagtatgagcagaaacta
ctgcaagacctgtacaaaagcaacccgaccttcctgcagagcccagcggtgtcaggggac
cggccgaaggccaaaggcaactccttacagagtaaagatggcctgtcgtcagaccccggg
aggagtcctccatcagagggctcagactgtgaacacttgacccctgcggggccacaacct
gacccgagcctggaccctgtaccggccctctgccctttctcctcacagcttgctagcccc
agccacacactgacagacatcatcagtataggcaacggtgacacctcacaactgctccgt
ggaggcagtgagtccccgtcgcccccccccggcctcagtaaatccagcctgctgctgccc
atcagtgtcccgggccacacagcccgctccccgttcgaggcggctcccgcggagtcccag
tccctgttctcggacaacagtaacttcaggcatcccaacccgctgcccagcggcctgagc
ggcttccccagctccccccacagcaacgctgactggcccacggcgccagagccacagagc
ctcttcacctcagataccatgccggtgtcgtcgtccacagactggcaggcagcgtttggc
tttggctcgtccaatcagcagcaggacgacgacctgggcttcgacccgtttgacatcaca
cgccgagctctggcggacctcattgagaaagagctctctgttgaagacagctttggctcc
gcccacagaacgctggggaccctgggagggctcccaccctctcagcacttcccacagcat
cagcaccctcgcagggcggactatagctccttcagcttcccctcccaccctccatcctcc
gcgtcctcggcatcctgtggctcctggatggcttccacctcttcacgcaggaactttgtg
catttgaaccacacagtcagtgtaacggctttcccctcacacagcaacttcttggacttg
acagtgctgccaggacatcacagttctgggcttggaggaatccccatcacagaaagcagc
agctgtggagagagtctaaatgtgaaggagtggcaggacggcctcagagcgctgttaccc
aacatcaacatcaactttggagggctgcccaactccacatcttcctcattgtcatcatcc
tcctcctcgtcatcctccagtgtccagcacgcgggggccccggggcttcctcacagcctc
tgctgggaccgcacagccagatggatggacccagccataatcaccgggatcccaacctgc
gctggcaacggtctggactctcttcaggacgacaaccctccacactggctcaagtccctg
cagacgctcacagaaatggacgccccgcccagctctgtctcacaaaatggctccttaggg
agccagccgcccccccacagagccggctgggcgcactacccggcccctagcagccagttc
cactccccgccgccaggcttccagacggccttcagacccccaacacagacccagacagac
ctgctacagagcgccgccatcgaccgccactag
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