Perca flavescens (yellow perch): 114552356
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Entry
114552356 CDS
T07494
Symbol
ddx6
Name
(RefSeq) probable ATP-dependent RNA helicase DDX6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
pflv
Perca flavescens (yellow perch)
Pathway
pflv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pflv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114552356 (ddx6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pflv03019
]
114552356 (ddx6)
03036 Chromosome and associated proteins [BR:
pflv03036
]
114552356 (ddx6)
Enzymes [BR:
pflv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
114552356 (ddx6)
Messenger RNA biogenesis [BR:
pflv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
114552356 (ddx6)
mRNA degradation factors
5'-3' decay
Decapping complex
114552356 (ddx6)
Chromosome and associated proteins [BR:
pflv03036
]
Eukaryotic type
Gene silencing
piRNA pathway
114552356 (ddx6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
114552356
NCBI-ProteinID:
XP_028428866
LinkDB
All DBs
Position
3:10554429..10571853
Genome browser
AA seq
482 aa
AA seq
DB search
MSTTRTENPVILGLSNQNGQLRGPVKPAGAPGGGGGGPLLQQLNQMKGTINNGNSQPAPT
TNAVIKPGDDWKKNLKLPPKDMRMKTSDVTATKGNEFEDYCLKRELLMGIFEMGWEKPSP
IQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERIDLKRDCIQAVVIVPTRELALQVS
QICIQVSKHMGGVKVMATTGGTNLRDDIMRLDETVHVIIATPGRILDLIKKGVAKVNQVQ
MVVLDEADKLLSQDFVLMMEEMLGFLAKQRQILLYSATFPLSVQKFMNAHLQKPYEINLM
EELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSC
FYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLGETYLHR
IGRSGRFGHLGLAINLITYDDRFNLKGIEEQLGTEIKPIPGIIDKSLYVAEYHSESGEEL
KP
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgagtaccaccaggacagagaacccagtgattttgggcttgtccaaccagaatggacag
ctcagaggcccagtgaagcctgctggagcaccaggtggaggtggaggaggccctctacta
cagcaacttaatcagatgaaaggcacaatcaacaatggtaactcccaaccggcccctaca
accaacgctgtcatcaagcctggagatgactggaagaaaaatttgaaattgcccccaaaa
gacatgagaatgaaaacttcggatgtgactgcaactaaaggcaatgagtttgaagattat
tgcctaaagagggagctgcttatgggaatctttgagatgggctgggaaaagccatctcca
attcaggaggaaagcattcccattgcactgtcaggaagggatatcttggccagagctaag
aatggcacgggaaagagtggagcctacctcattcccttacttgaacgcattgacctgaag
agggactgcatacaagcggtggtcatagtgcccaccagagaactggctctgcaagtaagc
caaatatgtatccaggtcagcaaacacatgggtggagtcaaggtaatggcaaccacaggt
ggaaccaacctacgtgatgacatcatgagactcgatgaaacggtacatgtgattattgcc
actcctgggaggattttagacctcatcaagaaaggggtggctaaagtcaatcaagtgcag
atggtcgttctggatgaagctgacaaactcctgtctcaggactttgtgcttatgatggag
gaaatgctgggcttcctggccaaacagaggcagattctgctttattctgcaaccttccct
ctcagcgtgcaaaagtttatgaatgcacacttgcagaaaccctatgagatcaacctgatg
gaggagcttacactgaagggtgtgactcagtattacgcttatgtaactgaaaggcaaaag
gtccattgccttaacaccttgttctccaggctccagatcaaccagtctataatcttctgc
aactcctctcagagagtggagctccttgccaagaagatctcccagctcggttattcatgt
ttctacattcatgccaagatgagacaggagcatcgcaaccgtgtgttccacgactttaga
aacggcctctgccggaatcttgtctgcactgaccttttcacaagaggaattgacattcaa
gctgtgaatgttgtgatcaatttcgactttcccaagctgggagaaacgtaccttcatcgc
attggtagatctggccgctttggacacttgggtctggccatcaacctcatcacttacgat
gatcgcttcaacctgaaggggattgaggagcagcttgggacagagatcaagcccatccct
ggcatcattgacaagagcctatatgtggcggagtaccacagtgagagtggcgaagaactc
aagccatga
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