Perca flavescens (yellow perch): 114552760
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Entry
114552760 CDS
T07494
Symbol
ercc2
Name
(RefSeq) LOW QUALITY PROTEIN: general transcription and DNA repair factor IIH helicase subunit XPD
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
pflv
Perca flavescens (yellow perch)
Pathway
pflv03022
Basal transcription factors
pflv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pflv00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
114552760 (ercc2)
09124 Replication and repair
03420 Nucleotide excision repair
114552760 (ercc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pflv03021
]
114552760 (ercc2)
03036 Chromosome and associated proteins [BR:
pflv03036
]
114552760 (ercc2)
03400 DNA repair and recombination proteins [BR:
pflv03400
]
114552760 (ercc2)
Enzymes [BR:
pflv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
114552760 (ercc2)
Transcription machinery [BR:
pflv03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
114552760 (ercc2)
Chromosome and associated proteins [BR:
pflv03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
114552760 (ercc2)
DNA repair and recombination proteins [BR:
pflv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
114552760 (ercc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
HBB
Helicase_C_2
ResIII
DEAD
SesA
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
114552760
NCBI-ProteinID:
XP_028429597
LinkDB
All DBs
Position
3:complement(33958403..33971875)
Genome browser
AA seq
760 aa
AA seq
DB search
MKLNIEGLLVYFPYDYIYPEQYSYMLELKRTLDAKGHGVLEMPSGTGKTISLLSLIIAYQ
KAFPLEVTKLIYCSRTVPEIEKVVEELRKLMEFYSKQTGESNNFLALALSSRKNLCIHPE
VSALRFGKEVDGKCHSLTASYIRAQRHSDPDMPVCRFYEEFDAVGRQVPLPAGVYNLDDL
KEFGRRKGWCPYYLARYSILHANIVVYSYHYLLDPKIADLVSKELAKNSVVVFDEAHNID
NVCIDSMSVNITRRTLDRCHTNVDTLQSTIEKIKETDAAKLKMEYRRLVEGLKEANVARE
TDVYLANPVLPDEILKEAVPGNIRTAEHFVGFLKRFLEYLKSRLRVQHVVQESAPQFLKD
IFDKVCIDRKPLRFCAERLQSLLRTLEIADIADFSAVTLISNFATLVSTYSQGFTIIIEP
FEDRTPTIANPVLHFSCMDPSIAIKPVFQRFQSVIITSGTLSPLDIYPRILDFRPVTMAS
FTMTLARTCLCPLIVGRGNDQVALSSKFETREDFAVIRNYGNLLLEMSAIVPDGIVAFFT
SYVYMENIVASWYEQGILENIQRNKLIFIETPDAAETSMALEKYQEACENGRGAILLSVA
RGKVSEGIDFVHHFGRAVIMFGVPYVYTQSRILKARLEYLRDQFQIRENDFLTFDAMRHA
AQCVGRAIRGKTDYGLMIFADKRYARADKRGKLPRWIQEHINDGSLNLTVDEAVQLSKHF
LRQMAQPFRQEDQLGLSLLTLEQLESEEMLQKIAKIAHQT
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atgaagctcaacatcgagggtctgctggtgtatttcccatatgactacatatatcctgag
cagtactcctatatgctggagctgaagaggactctggatgccaagggtcatggagtcctg
gagatgccatcaggaacagggaagaccatctctctgctgtctctcatcattgcctaccaa
aaggccttccctttggaagtgaccaagctaatatactgctccagaacagttcccgagatc
gagaaggtcgtggaggagctgaggaagttgatggagttttattccaagcaaactggagag
agcaacaacttcctggctctggctctttcctccagaaaaaacctctgcatccacccggag
gtgagcgctctgcgcttcggtaaggaggttgatgggaagtgccacagtctgacggcatcg
tacattcgcgcacaacgccacagcgaccccgacatgcctgtatgtcgcttctatgaggag
tttgatgcagtcggacgacaggtgcctcttcctgctggcgtctacaacctcgacgacctg
aaggaatttggcaggaggaaaggctggtgtccttattatctggcacgctactctatcctg
catgccaacattgttgtgtacagctaccactacctgctggaccccaagatagctgacctg
gtgtccaaagagctggccaagaattctgtagtggtgtttgatgaggctcataatatagac
aatgtgtgcatcgactccatgagtgtgaacatcaccaggcgaacacttgaccgctgccat
accaatgtggacactcttcagagcaccatagaaaagataaaggagacagacgctgctaaa
ctgaagatggagtacaggcgattggtggagggactgaaggaagctaatgttgccagggaa
acggacgtctaccttgcaaatccagttttaccagatgaaattctgaaagaggcggtccct
ggcaatattcgcacagcagagcactttgttggtttcttgaaacgtttcctggagtatctg
aagtcccgtctgagggtccaacatgtcgtacaggagagcgcgccgcagttcctcaaagac
atcttcgacaaagtctgcatcgaccgcaagcctctcaggttttgtgcagagcggttacag
tcgctactacgaactctggagattgctgacatcgcagacttctcagctgttactctcatc
tctaactttgctaccctggtcagcacctacagccaaggtttcacaataatcattgagccc
tttgaagacagaactccaaccattgccaaccctgtgctgcacttcagctgtatggatccg
tctattgccatcaaacctgtttttcaaagatttcagtcggtcattatcacctcggggact
ctctctccgctggacatctatccccgtatcctcgacttccgccctgttaccatggcatcc
ttcaccatgacgctggcacggacatgcctctgtcctctgattgttggcaggggaaatgat
caggtggccctgagctcaaagtttgagaccagagaagactttgctgtgattcgtaattat
ggcaacctacttctagagatgtcagcgatcgttcctgatggcattgtggcattcttcacc
agctatgtctacatggagaatatagtggcgtcttggtatgaacagggtatcctggagaat
atccagagaaacaagctgatcttcattgagactccggatgctgctgagactagcatggcc
ctggagaaataccaggaggcatgtgagaatggcagaggagcgatcctcctgtctgtggcc
aggggaaaggtgtctgaaggaatagattttgtgcatcattttgggcgggccgtcatcatg
tttggagtgccttatgtttacacgcagagccgcatcctaaaggctcgtctggagtacctt
cgggatcagttccagatcagagagaatgactttctgacgtttgatgccatgcgtcacgca
gcccagtgtgtgggcagagccatccgaggaaagaccgactacggactcatgatcttcgcc
gacaagcgttatgcccgagcagacaaacgggggaagcttcctcgctggatacaggaacac
atcaatgatggcagtctgaacctcaccgtggacgaggccgtccagctgtccaagcacttc
ctgcggcagatggctcagcctttcagacaggaggaccagttgggtctgtctctgttgact
ctggagcagctggagtcagaggagatgttgcaaaaaatcgccaagatcgctcatcagacc
tga
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