Perca flavescens (yellow perch): 114553177
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Entry
114553177 CDS
T07494
Symbol
rpa1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
pflv
Perca flavescens (yellow perch)
Pathway
pflv03030
DNA replication
pflv03420
Nucleotide excision repair
pflv03430
Mismatch repair
pflv03440
Homologous recombination
pflv03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pflv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
114553177 (rpa1)
03420 Nucleotide excision repair
114553177 (rpa1)
03430 Mismatch repair
114553177 (rpa1)
03440 Homologous recombination
114553177 (rpa1)
03460 Fanconi anemia pathway
114553177 (rpa1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pflv03000
]
114553177 (rpa1)
03032 DNA replication proteins [BR:
pflv03032
]
114553177 (rpa1)
03400 DNA repair and recombination proteins [BR:
pflv03400
]
114553177 (rpa1)
Transcription factors [BR:
pflv03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
114553177 (rpa1)
DNA replication proteins [BR:
pflv03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
114553177 (rpa1)
DNA repair and recombination proteins [BR:
pflv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
114553177 (rpa1)
MMR (mismatch excision repair)
114553177 (rpa1)
DSBR (double strand breaks repair)
HR (homologous recombination)
114553177 (rpa1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
RADX
Pox_vIL-18BP
DUF223
Motif
Other DBs
NCBI-GeneID:
114553177
NCBI-ProteinID:
XP_028430159
LinkDB
All DBs
Position
3:11154433..11187141
Genome browser
AA seq
599 aa
AA seq
DB search
MTKLSEGAIEALSNGTGGNDAVLQLVNIRKIDGGSGLPRFRVMMSDGVHTLSSFMLSTQL
NFMAEENRLAPNCVCILKKHVTNILKDKRRVVIILEIEIIKSAEDVAGRIGEPTPYTEGQ
GKGLQSAPNPENRPPLQQQNRNEGNKGFNRDFGKKAPSAMPSTPGDSSKVVPIASLNPYQ
SKWTIRARVTNKSSIRTWSNSRGDGKLFSMEIVDESGEIRVTGFNQEVDKFFSLVEVGKV
YYVSKGSLKIANKQYTSVKNDYEMTLNGESSIIPCEDDCDVPVMQCDFVSIGDLENREKD
AIVDVIGVCKSVDEVTRLTTKSNREVSKRTLNLMDMSGKLVTVTLWGEEAEKFEANGQPI
VAIKGAKLSDFGGRSLSASFSSTLMINPDIPEAYKLRGWYDKEGHAMDGQSLTEVKGSGG
GLTNWKTLSDVKTEHLGHGDKADYYTCIATIVYLRKENCLYQACPSQECNKKVVDQHNGM
FRCEKCDKEFPNFKYRLILSANIADYADNQWVTCFQESAEAILGQNAAYLGQLKDSNEAA
FDEIFQQANFNTFVFRSRVKLETYNDESRIKATVMDVKPVDHKDYSKRLIMNIRKLAAQ
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atgacgaagctatcagagggtgcgatagaggctctatcaaatggcaccggtggcaacgac
gcagtgcttcagttggtgaacatccgcaagattgatggaggaagcggtctacctcgcttt
cgggtgatgatgagcgatggagtgcacacactgtcctccttcatgctctcaacacagctg
aacttcatggctgaggagaacagactggccccgaactgcgtatgcattctcaagaagcat
gtaactaatatactgaaggataaacgacgggtggtgatcatcttggaaattgaaattatc
aagagtgctgaagatgttgctggaagaataggtgaacccactccttacactgagggtcag
ggcaaaggcttacagtcagcgccaaaccctgaaaaccgccctccactacagcagcaaaat
agaaacgaagggaacaaaggtttcaatagagactttgggaagaaggccccatctgctatg
cccagtactccaggggacagctccaaagttgtgcccattgccagcctcaacccctatcag
tccaagtggaccatccgtgcccgtgtaaccaacaagagcagcatccgtacatggagcaac
tctcgtggtgatggcaaactcttctctatggagattgtcgatgaaagtggagagatacga
gtgactggtttcaaccaagaggtggacaagttcttcagccttgttgaggttggcaaggtc
tactatgtctccaagggctccctgaagattgccaacaagcagtacacatcagtgaagaat
gactatgagatgactctcaatggagagtccagtatcatcccctgtgaagatgactgtgat
gttcctgtgatgcagtgtgactttgtttctatcggtgacctggagaacagagaaaaagat
gccatcgttgatgtgattggagtgtgtaagagtgtggatgaagtgacccgcctcaccacc
aagtccaacagagaagtgtccaagagaacgctcaacctgatggacatgtctgggaagctg
gtgactgtcacgctgtggggagaagaagcagaaaagtttgaagcaaatggacagcccatt
gtagccattaagggggcaaagctttcagactttggaggccgttccctctctgcatccttc
agcagcaccctgatgatcaaccccgacatccctgaggcatataagctccgaggctggtat
gacaaggagggtcatgccatggatggacagtctctgacagaggtgaaaggcagcggggga
gggctaaccaactggaagactctgtctgacgttaagacggagcacctgggacatggcgac
aaggccgactattacacctgcatagctaccatagtgtacctgcgcaaggaaaactgcctt
taccaggcctgtcccagccaggaatgcaacaaaaaagtggtagaccaacataatggcatg
ttccgctgtgaaaagtgtgacaaagagttccccaacttcaagtaccgcctcatcctttca
gccaacattgcagattacgcagacaaccaatgggtgacttgtttccaggagagtgcagag
gccatcctgggccagaatgcagcttaccttgggcagctcaaggactcgaacgaagctgcc
tttgacgagatcttccaacaagccaactttaacacttttgttttccgcagcagagtcaag
ctagaaacttataacgatgaatccaggatcaaggctacagtgatggatgtgaagcctgtt
gaccataaggactacagcaagaggttgatcatgaacataaggaaactggctgctcagtag
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