Perca flavescens (yellow perch): 114553229
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Entry
114553229 CDS
T07494
Symbol
scarf1
Name
(RefSeq) scavenger receptor class F member 1
KO
K24318
scavenger receptor class F member 1
Organism
pflv
Perca flavescens (yellow perch)
Pathway
pflv04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
pflv00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
114553229 (scarf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pflv04131
]
114553229 (scarf1)
Membrane trafficking [BR:
pflv04131
]
Endocytosis
Phagocytosis
Scavenger receptors
114553229 (scarf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
EGF_TEN
EGF_2
EGF_Teneurin
Motif
Other DBs
NCBI-GeneID:
114553229
NCBI-ProteinID:
XP_028430247
LinkDB
All DBs
Position
3:18496220..18505644
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AA seq
917 aa
AA seq
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MKLLLRALSALLCFSLSSQTLDPDGRNVCHNIRDPSTLVCCTGWRQEGKECTIPVCEGEL
ACLKDEICVYPGVCRCPPGYYGAHCKTRCPSEFWAPDCRQVCQCYPHGRCHPVTGECTCN
SNRWGPLCQYACKCGRNGHCHPVHGNCTCNEGWWTSTCSKPCQCVSGGSVGPGCDQLTGR
CQCNRGHWGLKCPITCNCYLSPCNQRTGVCECESGWWGPNCDRRCNCDLTHSSCDQADGQ
CLCHAGYQGLFCNQPCEAGKYGSGCKMSCGYCKDNQICSATDGACDACESGWNGTRCDHP
CPAGSYGDGCQGKCPRCRNNEPCDPINGKCWRCDPGWTGPRCEEACSNRTFGDACSFLCS
PCFHGNCHHVTGRCVCQPGFQGESCNSSCPAPQFGLNCSSVCDCGEGGGCDPVTGVCPNS
GRAAVLAGVLVPLLLVLLAVLCCCLCCGGGPVDGKDRATVADGGLSVRMKYHVYSVLANI
GAALPCISDWSSGLPRVTVSHHDPELTFNHSFIEPPSSGWVTEGSSFDTDEEEGEALYCV
PPREDIPSVAGGEFHEMSSKCNMFLDPSGFSSEDITSAFNIPRTSSIAKSKRPSVSFAEG
TRFSPKERRGSAQDPGALPGHPRNKPKSPWGVLMLSALQSQGSAARTGDEDGAEGEEGED
EVEVQATDNQESSCEAGDQEVDRTSSRATLQVPGASGRRRTMSNTAAHKGMQLPTSASDA
QVGVLNKVTTVYVTVGKAGRPASKTETNSEGPVQAMLRRLGSLQRQREQESGRPKPKGAE
GITKPPRRKLGARASVWEEGGTPGSEVGICKPIRRKHASLNSSDTAGANDTPSSESGTPK
RPLSSNLQSVPELASADSGSDQRAEGGDLSTGKTEGTYLTVGPAGDAVSLTEVIPNEGAV
VSTIDEPCYENVIIKHS
NT seq
2754 nt
NT seq
+upstream
nt +downstream
nt
atgaagcttctccttagagctctgagtgctctgctctgcttctcgctgtcctcacaaaca
ctggatcctgatgggaggaacgtctgccacaatatcagggacccctctaccctggtctgt
tgcactgggtggcgtcaagagggaaaagagtgcaccatacctgtgtgtgagggtgagctg
gcttgcctgaaggatgagatctgtgtgtatcctggagtgtgtcgctgcccacctggctac
tacggagctcactgtaaaacacgctgtccttctgagttctgggctccagactgtcgccag
gtgtgtcagtgctacccacacggccgctgtcaccccgtcaccggtgagtgcacttgcaac
tccaaccgctggggtccactgtgtcagtacgcctgcaagtgcggccggaacggccactgc
cacccggtccatggaaactgcacctgcaacgagggctggtggacgtcaacctgctccaag
ccgtgccagtgcgtcagcggggggtctgtgggtcccggctgcgaccagctaacaggccgg
tgtcagtgcaacaggggccactgggggctgaaatgtcccatcacttgcaactgctatctg
tcgccatgtaatcagcgtaccggtgtgtgtgagtgcgagtcaggctggtggggtcccaac
tgtgaccgccgatgtaactgtgacctcacacacagcagctgtgaccaggccgacgggcag
tgcctgtgccacgcagggtaccagggtctcttctgcaaccagccctgtgaagctgggaag
tacggcagtgggtgtaaaatgagttgtggttactgtaaagacaaccagatctgctctgcc
actgatggcgcctgtgatgcctgtgagtccggctggaacggtacacgatgcgaccacccg
tgcccggctggttcctatggtgacggctgccaggggaagtgtccgcgctgcagaaataac
gaaccctgtgaccccataaatgggaaatgttggaggtgtgaccctggatggactggaccc
aggtgtgaggaagcctgctctaacaggacgtttggagatgcctgcagcttcctgtgtagc
ccttgtttccatggtaactgccatcatgtgacaggaagatgtgtctgtcagccaggcttt
cagggagagagctgtaacagcagctgccctgccccgcagtttggcctcaactgttcctcc
gtctgtgactgtggtgaggggggtggctgtgacccagtcactggtgtctgccccaacagt
ggcagagctgcagtactagcaggtgtgctggttcctttgctcctggtgctgcttgctgtc
ctctgctgctgtttatgttgtggaggaggtcctgttgatggcaaagaccgggcgactgtg
gctgatggaggcttgtcagttcggatgaaatatcacgtctacagcgtcctggctaacatc
ggtgctgccctcccctgtatttctgattggtcctctggcctgcctcgtgtcacagtgtct
caccatgacccagagctgacgttcaaccacagcttcattgagcctccttcctctggctgg
gtgactgaggggtcgtcctttgacactgatgaggaggagggagaggcgctctactgtgtc
cctccgagagaagacatcccgtcggtggcgggcggcgagttccacgagatgagctcgaag
tgtaacatgttcttggacccatctggcttcagcagtgaggacatcacatcggccttcaac
atccctcgcacctccagcatcgccaagtccaagaggccgtctgtctcgtttgcagagggc
acgcgctttagccccaaggagaggcgtggctcggctcaggacccaggcgctctccctgga
cacccacgcaacaaacccaagtcaccgtggggagttttgatgctgtctgccctccaaagt
caaggaagtgcagctagaactggggacgaagatggtgccgagggcgaggagggggaagat
gaagtggaagtgcaggcgacagacaatcaggaatcaagctgtgaggcaggggaccaggaa
gtagacagaacgtcttcccgggccaccctgcaggtccctggggcatcaggacgaaggcgg
actatgtccaacacagctgctcataaagggatgcagctgccaacatctgcctctgatgct
caggtgggggtcttaaataaggtcaccacagtgtatgtgactgtgggtaaagcaggtagg
cccgcgtcgaagacggagacaaactctgaaggccccgtccaagccatgctgcggcgactc
ggcagcctccagagacaaagggagcaggagtctggcaggcccaagcctaaaggagctgaa
gggattaccaaaccacccaggaggaagctcggcgctcgggcgagtgtgtgggaggaggga
gggacacctggaagcgaagttggcatatgtaagccaatcaggagaaagcatgcttctctc
aactcctctgacacagctggtgctaatgacactccatcatccgagagcggcactccaaaa
aggcctctgtcgtccaatttgcagagcgtgccagagttggcttcagctgattcagggtca
gatcagagggctgagggtggtgacctcagtacaggaaaaactgagggcacctacctgact
gtgggaccagccggagacgctgtaagtctcactgaggtcatccccaatgaaggtgcagtg
gtcagtacgattgatgaaccctgctatgaaaatgtcattattaaacactcataa
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