Perca flavescens (yellow perch): 114553273
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Entry
114553273 CDS
T07494
Symbol
ddb1
Name
(RefSeq) DNA damage-binding protein 1
KO
K10610
DNA damage-binding protein 1
Organism
pflv
Perca flavescens (yellow perch)
Pathway
pflv03420
Nucleotide excision repair
pflv04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pflv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
114553273 (ddb1)
09124 Replication and repair
03420 Nucleotide excision repair
114553273 (ddb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pflv04121
]
114553273 (ddb1)
03400 DNA repair and recombination proteins [BR:
pflv03400
]
114553273 (ddb1)
Ubiquitin system [BR:
pflv04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
114553273 (ddb1)
DNA repair and recombination proteins [BR:
pflv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
114553273 (ddb1)
TCR (transcription coupled repair) factors
Cul4-CSA complex
114553273 (ddb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_RSE1_1st
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
114553273
NCBI-ProteinID:
XP_028430313
LinkDB
All DBs
Position
1:13448163..13509221
Genome browser
AA seq
1140 aa
AA seq
DB search
MSYNYVVTAQKPTAVNACITGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK
IAVMELFRPKGESKDLLFILTSKYNACILEYKQNGESIDIITRAHGNVQDRIGRPSETGI
IGIVDPECRMIGLRLYDGLFKVIPLDRDNRELKAFNIRLEELQVIDVHFLYGCQAPTVCF
IYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIPVPEPFGGAIIIGQESITYH
NGDKYLAIAPPTIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEELMDGTVALKDL
HVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVAVMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSEAGRE
TDDMLVLSFVGQTRVLMLSGEEVEETELPGFVDNQQTFYCGNVAHQQLVQITSGSVRLVL
QESKALVSEWKEPQGRNISVAACNHTQVVLAVGRALYYLQILAGELKQISTTEMEHEVAC
LDITPLGEGGGESPLCAVGLWTDISARVLKLPCFTALHKEMLGGEIIPRSILMTTFEGSY
YLLCALGDGALFYFGLDLQTGALSERKKVTLGTQPTVLRTFRSLSTSNVFACSDRPTVIY
SSNHKLVFSNVNLKEVNYMCPLNSEGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES
PRRICYQEVSQCFGVLSSRVEIQDVSGTTSAVRPSASTQALSSSVSSSKLFPSSTSPHET
SFGEEVEVHSLLVVDQHTFEVLHAHQFLPSEYALSMVSCRLGKDPSVYFIVGTAMVYPEE
AEPKQGRIIVFHYTDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAEKELR
TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL
DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGVFHLGEFVNVFCHGSLVLQNLGES
STPTQGSVLFGTVNGMIGLVTSLSEGWYSLLLDLQTRLNKVIKSVGKIEHSFWRSFHTER
KTEQATGFIDGDLIESFLDLGRAKMQEVVSTLQIDDGSGMKREATVDEVIKIVEELTRIH
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtacaactacgtggtaaccgctcagaaacctacggcagtcaatgcctgcatcaca
ggtcacttcacctctgctgaagacctcaatctgctcatagctaaaaacacacggttggag
atctatgtggtgacagccgaggggctgaggcccgtcaaggaggtgggcatgtatggaaag
attgctgtcatggagctcttcaggccaaagggtgagagcaaggacctgctgttcattctc
acatccaagtacaacgcctgcatcctagaatacaaacagaacggggagagcattgacatc
atcactcgtgcccacggcaatgtccaggatcgtatcgggcgtccatcggaaacgggtatc
atcggaattgtagacccagaatgccgtatgattggcctgcggctgtatgacggcttgttc
aaggtgatcccattggaccgggacaaccgtgagctcaaggccttcaacatcagacttgag
gagctgcaggtcatcgatgttcacttcctgtatggctgccaggccccaaccgtctgcttc
atctaccaggacccccagggacgccatgtgaagacctacgaggtttctctgagggagaag
gagttcaacaagggcccctggaaacaggagaatgtggaagctgaggcatctatggtcatc
ccggtgccagagccatttggtggagctataatcataggacaagaatccatcacctaccac
aatggagataaatacttggccattgcaccacctactatcaagcaaagcaccatcgtctgt
cacaaccgggtggaccccaatggctctcgctacttgctgggggacatggagggacgtctg
tttatgctgctgctggagaaggaggaactcatggacggcaccgtggcgctcaaagacttg
cacgtggagctgctcggagagacatccattgctgagtgtttgacctacttggataacggc
gtggtctttgtgggctccagactgggcgactcccagttagtgaagctcaacgtggacagc
aatgaacagggctcgtatgtggcggtgatggagacgttcaccaacctagggcccatcgtg
gacatgtgtgtggtggacctggagaggcagggccagggccagctggtgacgtgctctggt
gcgttcaaggagggctcccttcggatcattcgcaacggcattgggattcatgagcatgcc
agcattgaccttccgggaatcaaaggcttgtggccgctccgctcagaggcaggccgagag
acagatgacatgctggtgctgtctttcgtgggacaaacacgagtgttgatgctgagtggc
gaggaagtcgaggagactgaacttcctggcttcgtggacaaccagcagaccttttactgt
ggcaacgtggcgcaccagcaactcgttcaaatcacatcgggctctgtgcgcctggtgctc
caggagagcaaggcattagtgagtgaatggaaggagccacagggcaggaacatcagcgtg
gctgcctgtaaccacactcaggtggtgctcgccgtgggccgagccctctactacctgcag
atcctggctggagagctcaaacagatcagtaccacggagatggagcacgaggtggcctgc
ctggacatcacacctctgggggagggtggcggtgagtcaccgctctgcgctgtgggactc
tggactgacatctcagcccgtgtgctcaaactgccctgctttacagccctgcacaaggaa
atgctcggcggagagatcatccctcgctccatcctaatgaccaccttcgaaggcagctac
tacctgctgtgtgcgctgggagacggagcgctcttctactttggtctggacctgcagact
ggcgccctgagcgagcgtaagaaggtcacgctcggcactcagcccaccgtgctgaggacc
ttcaggtccctgtccacttcaaacgtcttcgcctgctccgaccgacccactgtcatctac
tcgtccaaccacaagctggtcttctccaacgtcaacctcaaggaggtcaactatatgtgc
ccactcaactcggagggttatcccgacagtctggctctggccaacaacagcactctgacc
atcggcaccatcgacgagattcagaaactccacattcgcaccgttcccctctacgagtct
cccaggcggatctgttaccaagaggtttcccagtgtttcggggttctatccagcagggtg
gagattcaggatgtgagcggcaccacatctgctgtgcgccccagtgccagcactcaggct
ctctccagcagcgtgagctccagcaagctcttccccagcagcacttctccccacgagacc
tcctttggtgaagaagtggaggttcacagtctgctagtcgtggatcagcacacctttgaa
gtcctccatgcccatcagttcctccccagcgagtacgctctcagcatggtgtcatgtcgt
ctgggaaaagacccatcagtgtattttatcgtcggcaccgccatggtgtacccagaggag
gctgagcccaagcagggacgcatcattgtcttccactacactgacggtaagctgcaaact
gtggctgagaaggaggtgaaaggagctgtctattctatggtggagttcaatggcaaactg
ctggccagcatcaatagcacagtccgtctgtacgagtggacggctgagaaggagctgagg
accgagtgtaaccactacaacaatatcatggctctttacttgaagaccaaaggagatttc
atcctggtgggagacctgatgaggtccgtcctgctgctggcgtacaaacccatggagggc
aactttgaagagattgcgcgtgactttaatcctaactggatgagtgctgtggaaatcctg
gacgacgacaacttcttgggggcggagaatgcattcaatctgtttgtctgccagaaggac
agtgcggccaccacagatgaggagcggcagcacctgcaggaggtgggggtctttcacctc
ggggagtttgtaaatgtcttctgccacggctcgctggtgctgcagaacctgggcgagagc
tccacgccaacccagggctctgtgctctttggcacggttaacggcatgattggtctggtg
acgtccctgtccgagggctggtacagcctcctcctggatctgcagacccgcctcaacaag
gtcatcaagagcgtgggcaagatcgagcacagcttctggagatccttccacacggagcgt
aagacagagcaagccacaggattcatcgatggggatctgattgagagtttcctggatctt
ggtcgagccaagatgcaggaggtcgtcagtactctacagatcgatgacggcagcggcatg
aaacgtgaagccacagtggacgaggtcattaagattgtggaggagctgacgaggatccac
taa
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