Perca flavescens (yellow perch): 114555341
Help
Entry
114555341 CDS
T07494
Symbol
tgfbrap1
Name
(RefSeq) transforming growth factor-beta receptor-associated protein 1
KO
K20177
vacuolar protein sorting-associated protein 3
Organism
pflv
Perca flavescens (yellow perch)
Pathway
pflv04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
pflv00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
114555341 (tgfbrap1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pflv04131
]
114555341 (tgfbrap1)
Membrane trafficking [BR:
pflv04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
114555341 (tgfbrap1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
Clathrin
TPR_Vps41
DUF7742
Prok-RING_1
Motif
Other DBs
NCBI-GeneID:
114555341
NCBI-ProteinID:
XP_028433462
LinkDB
All DBs
Position
1:19870956..19887785
Genome browser
AA seq
875 aa
AA seq
DB search
MSVKAFELVPAVERDLLMGDKARINIECIECCGKHLYMGTNDCFIHHFLLDEVTSSKGKL
SYLAQKLLHKYLGLKKPVAELRAASALERLIVLCDGIVFLVDMVTLETMPSAAGGGAKIR
GVTAFCINENPVNGDPFCVEMGVLSSKRRTVQIYMVYEDRVQLVKEVTTPEQPCAVSVDG
YFLCLALATQYMILNYNTGASQDLFPYNSEERRPIVKRIGREEFLLAAPGGLGMFANAEG
VSQRAPVNWSESVIGAAVCFPYVVALDESFITVHSMLDQQLKQTLSFRDGHILQDFEGKV
ILASTKAVYVLVPLPLERQIQDLLASHRVEEALLLTEGAQQNIPKDKYQILHKRILQQAG
FIQFGQLQFLEAKEHFRKGQLDVRELISLYPLLLPASSSFTRCHPPLHEFADLNHLAQGD
QEKVLRCKKFLISYLGEVRSTEVANGCKEDVDTALLKLYAEQDHDSLLDLLASDNACQLA
DSLPWLEKYHKYFALGLLYHYNGQDSAALQLWIRVVDGDLQDSTRSDLYEYIVDFLYSCS
NLDLIWKYADWALQKDPTIGVHIFTKRPASKDLSELNPDDVITYLGKHSQALLLYLEHLV
LERRTKKEKFHTHLAVLYLERVLSLLSESPTDEQKLTRARERLQGLLRESNLYRAQFLLG
KMEDCEQLLLERATLHGKLEEHDKALHILVHKLRDFPSAEAFCTWASCCRDSAYRQQLFH
LLLGVYLDRNLSGKPQTAAGGGDLEMAAVDLLNRHGEVFDAVRVLRMLPEGWSLQLLRPF
LGRAIRASMHACRTSQIALGLAHSENLQLLHDRLKDRKKPVFVSEKKGCHLCHNTFSEPD
VVCLPGGVPVHTHCVAQRVRDSPTKRRLTNSSNHT
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtgaaggcttttgagcttgtccccgctgtggagcgagatctcctcatgggcgac
aaggctcgcatcaacatcgagtgcattgaatgctgtggaaagcacttgtacatgggtacc
aatgactgcttcatccaccacttcctgctggacgaggtcacttcctccaaaggaaaattg
agttacttggctcagaagctgctgcacaaatatctgggcctcaagaaaccagttgctgag
ctgcgtgctgcctccgctttggagcgtttgatagtgctttgcgatggaattgtcttcctg
gttgacatggtaacactggagaccatgccctcggcggcaggaggtggagccaagatcaga
ggtgtgacagcgttctgcattaacgagaacccagtgaacggtgatccgttctgtgtggaa
atgggtgtgctctcctccaagcggcggacggtgcagatttacatggtgtatgaggacaga
gtgcagctggtcaaagaggtgaccactcctgagcagccctgtgccgtcagtgttgacggg
tacttcttgtgcctggccctggctacacagtatatgattctgaactacaacacaggagcc
tcccaagacctctttccttacaacagtgaagagaggagacccattgtgaagaggatcggc
agggaggagttcctcttagcagcacccggtggtctgggaatgtttgccaatgcagaaggg
gtatctcagcgggctccggtcaactggtcagagagcgtgattggtgctgctgtgtgtttt
ccgtacgtggtggctttggatgaaagcttcatcactgtccacagcatgttggaccaacag
ctaaaacagaccctttcattcagggatggacacattctgcaagactttgaaggaaaggtc
attctggcttccactaaggcagtctatgtcctggtacctctgccgcttgagagacagatc
caggacttgctggccagtcacagagtggaggaggcactcctcctcacagagggagcacag
caaaatattcccaaagacaagtaccagattttgcacaaaagaattctccagcaggcaggt
ttcatacagtttggccagcttcagtttctagaagcaaaagaacacttcaggaagggtcag
ctggatgtgcgggagctgatatctctctacccactgttgctgccagcttcctcttcattc
acacgctgccatcctcctcttcacgagtttgcagatctcaaccacctggcccagggcgac
caggaaaaagtgctgcgatgcaagaaattccttatcagttatttaggagaggtacgaagc
acagaggtggccaatggctgtaaagaggacgtggacactgcactgttaaagctgtatgct
gaacaggatcatgacagccttctagatctgctagcttcagacaatgcctgccaactagcg
gacagccttccatggctggagaaatatcacaaatattttgcacttgggctgctctatcat
tataatggtcaggattcagcagcacttcagttgtggattcgcgtggtagatggggatctg
caggactccacaagatctgacctttatgagtacatcgtggactttctctactcctgttcc
aacctggacctcatatggaagtatgcagactgggccttgcagaaggatcccaccataggt
gtccacatttttaccaaaaggcctgccagcaaagatctgtccgaactgaaccctgatgat
gtcatcacttacctgggaaagcacagccaggcgctgcttctctacctggaacacctggtg
ctggagagaaggacaaagaaggagaagttccacacacacctggccgtgttgtacctggag
agggtcttgtcactgctgtcggagtcgccaacagatgagcagaagctcaccagagctaga
gagaggctccaaggcctgctcagggagtccaatctataccgtgcacagtttcttttaggt
aagatggaggactgtgaacaactgctgctagagcgtgcaacactacatggaaaactggag
gagcatgataaagcactgcatatcttggttcacaagctgagagacttcccatctgctgag
gccttctgtacatgggcctcttgctgtcgggattctgcgtaccgacagcagctatttcac
ctgctcttgggggtgtatctagacagaaacctttctggaaaaccccagactgcagcagga
ggtggagacctggagatggcagcggtggacctcctaaatcggcacggcgaggtgtttgat
gcggtccgtgtcctgcgcatgctccccgagggctggtcactgcagctgctgcggcccttt
ctgggtcgagccatccgggccagtatgcatgcctgccgcacctcccagattgctctgggg
ctagcccactctgaaaaccttcaactgctgcatgaccggttgaaagaccggaagaaacca
gtctttgtgtctgaaaagaaaggatgccacctgtgccacaacaccttcagtgagcctgac
gtggtgtgtctgccaggtggagtgcctgtccatactcactgtgtcgcccagagagtgaga
gactctcccacaaagagacggttaactaatagcagtaaccacacgtga
DBGET
integrated database retrieval system
