Perca flavescens (yellow perch): 114555358
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Entry
114555358 CDS
T07494
Name
(RefSeq) RNA exonuclease 1 homolog isoform X1
KO
K14570
RNA exonuclease [EC:3.1.-.-]
Organism
pflv
Perca flavescens (yellow perch)
Pathway
pflv03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
pflv00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
114555358
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pflv03009
]
114555358
Ribosome biogenesis [BR:
pflv03009
]
Eukaryotic type
Pre-60S particles
RNases
114555358
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
EloA-BP1
RNase_T
Zwint
KIX_2
Motif
Other DBs
NCBI-GeneID:
114555358
NCBI-ProteinID:
XP_028433488
LinkDB
All DBs
Position
5:27302103..27311632
Genome browser
AA seq
1201 aa
AA seq
DB search
MFPSSGLFAYINCPFSKSGHCERPHCLYKHATELRDTFGGSYKPSLVDAGLQNVYPVNDE
TREDGLQELERINKEIETVRHEVEQEQRRLSRYQTVQADRINTMPNFSVSKSETADKHVD
KGSSRLSSCTDVTKTYSRARKYVVDNSKPRTDLEYDPLSNFSAGLRSYSSSSKEQKVRNG
LGLKRAINTVPCDQKKPVACPSPLSRSPSPEPFDDSNEDCVLIIDIPPSPDKKRARVQKP
LHSVGGKSLQDNVQESEEVQTPISLLNAEVCKVTYPSASTIEGNRLYCNCGAENNQGPLN
LYENKECENISVDGSVVDLTGCLGDLQSECQKMTPFQAAETLLEKPAGPATTDLHDQNWN
NLVGEKEENAFHVELPQCELPHSVKKMNPMQSHHFPPTNSLFYKAPVANSDLPCRQHTKQ
AQTAEQPAQNRVSNQWSFTKCVPSVLPHSQKMSSKMPGQMQAKAAAPESYLAPAEPASDS
SQARHHSASSSANQVELSSGLTEQLFGTEDEVITICSSSDDEDELNYSEMELSDSDPMEE
CYRIFMEANNEDKGNDEQPEVSVGAMDVEKPNVKPQALPLKKRVAHEAKHTEQPVANRRP
QPQVLVPLRVPAVSGFASQPSIPPKIQQVRQGASMLTASVKGGQAFVSSTGQWKPETQTA
PFPLTQTPENLQPAPVQNAYMNYVSLGTAVIGVGNNLHFILPEGTFPLPVASSSSQVTSV
LTPLSQVYTSTAAVRQMCHPPAVTSVQRYRTTAPVLIPAPARKPSLNSAFSSAHSSPAVS
TTPLAAVHSTVKPVPTKRKLKQQCEAAKDKVPHDIRQRYVNMFTEEFLKTTANVNDAFEK
ALAEEKAVYNRSVNKLKYLSVAVNALKKLKNQSAVAAKDENKVNSQRSKGNIPLNLKNFR
ENADMPFYESLKDYILTEERLVESNYPVQHPEKPGWAVLFADNKKGSADPLKRICCRCGA
TYSVNQMGKHIRKEECNYHYGKGVTKKVPGGVETRYSCCEGVMGAPGCQVFKLHVHDSLS
LDGFVSTAPRHASDKNCPGVYSLNCEMCYTIHGLELSRVTVVNSSLHVVYDTFVRPDNEA
IDYNTRFSGISEEDVKGNCTSLTEVQETLLSFISADTILIGHGLETDLCALKLLHGAVVD
TSVVFPHRLGLPHKLTLNNLTAEYLRRIIQESVCGHDTAEDAAACMELMLWKVKEDGKLK
K
NT seq
3606 nt
NT seq
+upstream
nt +downstream
nt
atgtttccctcgtctggtctctttgcttatataaattgtcccttttcaaaaagtgggcat
tgtgagcggcctcactgtttgtacaaacatgccactgaattgcgggatacgtttggtggc
tcgtataagccatcgctagttgatgcaggactgcaaaatgtctatccagtgaatgatgag
accagagaagatggcctccaggagctggagcggatcaacaaggagattgaaactgtaagg
catgaggtggagcaggagcaaagacgactgtcgcgctaccagaccgtacaggcagaccgc
ataaacactatgcctaatttttctgtttccaagtctgagactgcagataaacatgtagac
aaaggttcttctaggctgtcttcatgcacagacgtaactaaaacatactcccgagcaagg
aagtatgtggttgacaactcaaaaccaaggactgacttggagtatgaccctctgtccaac
ttttctgctggcttaaggtcttatagctcatcaagtaaagagcaaaaagtgagaaatgga
ctgggtttgaaaagagcaattaacactgtaccttgtgaccaaaagaagccagtcgcatgt
ccgtctccgctttccagatcgccatctccagagccatttgatgactccaatgaagactgc
gtcctgattattgacattcctccctcgcctgataaaaagagagcgagagttcagaaacct
cttcattctgttggtggcaaatcccttcaggataatgtgcaggaatcggaggaggtccaa
acacccatttcacttctaaatgctgaagtgtgcaaggtaacctatccatctgcatcaaca
atagaaggcaatagactttattgtaattgcggtgctgaaaacaatcaaggtccattaaat
ctttatgagaacaaagaatgtgaaaatatatcggttgatgggagtgtagttgatttaact
ggctgtttaggagacttgcaaagtgaatgtcagaaaatgactccctttcaggctgctgaa
acattgttggagaagcctgcaggtcctgccaccacagacctgcacgatcaaaactggaac
aatctggtgggggaaaaggaagaaaatgcatttcatgtggaattgcctcagtgtgagctg
ccccatagtgttaagaaaatgaatccaatgcagtcgcatcattttccaccaacaaattca
cttttttataaagctccagttgctaactcagacttaccatgcagacaacacaccaagcaa
gctcagacagcagagcagccagctcagaacagagttagtaatcagtggtctttcacaaaa
tgtgtaccatcagtgctgccacacagccaaaaaatgtcaagcaaaatgccaggacagatg
caggctaaagctgctgcacctgaaagctacctggcgccagcagaaccagcttcagacagc
agccaggctcggcaccattcagcatcaagttcggccaaccaagttgaattatcatccgga
ttaactgaacagctttttgggacagaagatgaggttataaccatttgttccagctctgat
gatgaagatgagctcaactattcagaaatggaactgtctgacagtgacccaatggaggaa
tgctacaggatcttcatggaggctaacaacgaggataagggaaatgatgagcagcctgaa
gtgtctgttggagctatggatgtagagaaacccaatgtcaaaccccaagcattgccacta
aagaagagagtggcgcatgaagccaaacatacagagcagccagtagctaatcgcagacct
cagccccaagtgctggttcccttacgtgtgcctgcggtgtcaggattcgcctcgcagccc
tccatcccccccaagatccagcaggtacggcagggagcctccatgttgactgcttcagtt
aaaggtggtcaggcttttgtttcctccaccggtcagtggaagccagagacccagactgca
ccttttcctttaacacaaacccctgaaaacctgcagcctgctcctgtgcaaaatgcttac
atgaactatgtatctttgggaactgccgtgatcggagtgggcaacaatttgcactttatc
ctccccgagggcacgttccccctgcctgtcgcttccagttccagccaagttacttcggtg
ctaaccccactcagtcaagtgtacacaagcactgccgctgtgagacaaatgtgccatcca
cctgctgttacctctgtgcaaagataccgcaccacagcacctgttctcattcctgccccg
gcacgtaaaccttcactgaactctgctttttcatcggcacattcaagtccagctgtttcc
actactcctctagctgctgtccattctactgtcaagccagtgcccactaaacggaaattg
aagcagcagtgtgaggccgctaaagacaaagtgcctcatgacattcgacagcgttatgtg
aacatgtttacggaggagttcctcaagacaacagccaatgttaatgatgcctttgaaaag
gcacttgctgaagagaaggctgtgtataatcgcagtgtgaacaaactcaaatatctgagt
gttgcagtgaatgcactgaagaagctgaagaaccaaagtgctgttgctgctaaagatgaa
aataaagtcaacagccaaagatccaaaggcaacattcctcttaatttgaagaattttaga
gaaaacgcagatatgccattttatgagagtttgaaggactatattttgactgaggaaagg
ctggttgagagcaactatcctgtacagcacccagagaaacctggttgggctgttcttttt
gctgacaataagaaaggcagtgcggacccccttaagaggatctgctgtcgatgtggtgct
acatactctgtgaaccaaatgggcaaacacatccgtaaggaggagtgtaattaccattat
gggaaaggagttacaaaaaaagtgccaggtggagtggagacccgctacagttgctgtgag
ggagtcatgggagcacctggatgtcaggtgtttaagttgcatgtccatgattccctcagc
ctggatgggtttgtctcaacagcccccagacatgcctcagataagaattgtcctggggtc
tactccttgaattgtgaaatgtgttatactattcatggtctggagctatccagagtaacg
gtggtcaactctagtctgcatgtcgtctacgacaccttcgtcagacctgataatgaggct
atcgactataacaccaggttttcaggcatcagtgaggaagatgtgaagggtaactgcacc
tccctcacagaggtgcaggagaccttattgagcttcatcagcgccgacaccattctgatt
ggacatggcctggaaacagacctctgtgccctgaagttgctccatggggcggtggtagac
acatcagtggtcttccctcaccgtctgggcctccctcacaagctgaccctcaacaacctc
actgctgaatacctcaggaggatcatccaagagagtgtttgtggccacgacactgcagaa
gatgctgctgcctgcatggagcttatgttatggaaggtcaaagaagatggaaaactgaaa
aaatga
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