Perca flavescens (yellow perch): 114555473
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Entry
114555473 CDS
T07494
Symbol
smarcb1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
pflv
Perca flavescens (yellow perch)
Pathway
pflv03082
ATP-dependent chromatin remodeling
pflv03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
pflv00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
114555473 (smarcb1)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
114555473 (smarcb1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pflv01009
]
114555473 (smarcb1)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pflv03021
]
114555473 (smarcb1)
03036 Chromosome and associated proteins [BR:
pflv03036
]
114555473 (smarcb1)
Protein phosphatases and associated proteins [BR:
pflv01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
114555473 (smarcb1)
Transcription machinery [BR:
pflv03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
114555473 (smarcb1)
SWI/SNF complex
114555473 (smarcb1)
Chromosome and associated proteins [BR:
pflv03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
114555473 (smarcb1)
PBAF complex
114555473 (smarcb1)
SWI/SNF complex
114555473 (smarcb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF5
INI1_DNA-bd
DUF1679
Motif
Other DBs
NCBI-GeneID:
114555473
NCBI-ProteinID:
XP_028433672
LinkDB
All DBs
Position
5:32534865..32544531
Genome browser
AA seq
373 aa
AA seq
DB search
MALSKTFGQKPVKFQLEEDGDFYMIGSEVGNYLRMFRGSLYKRYPSLWRKLASVEERKKI
VESSHDHGYTQLATSVTLLKASEVEEILEGNDEKYKAVSISTEPPAYLREQKAKRNSQWV
PTLPNSSHHLDAVPCSTTINRSRLGRDKKRTFPLCFDDHDPAVIHENATQSEVLVPIRLD
MEIEGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLNPLAFVPAIASAIRQQIESYPTDS
ILEEQTDQRVIIKLNIHVGNISLVDQFEWDMSERENSPEKFALKLCSELGLGGEFVTTIA
YSIRGQLSWHQRTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAEMEKKIRDQDRNT
RRMRRLANTAPAW
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
atggcgcttagcaaaacgtttggacaaaaaccggttaaatttcagctcgaggaggatgga
gacttttacatgattggatcggaggtgggaaactacctccgtatgttcagaggctctctg
tataaaagatacccgtcgttatggaggaaactggcttcggtggaagaacggaagaaaata
gtggagtcatcacacgatcacggctacactcagctggccaccagtgtgactctgctgaag
gcttcggaggtcgaggagatcctcgaaggaaacgacgagaagtacaaagctgtctctatc
agcactgagccccctgcctacctcagggagcagaaggcgaagaggaacagtcagtgggtt
cccacgctgcccaacagttctcaccacctggatgcggtgccctgctccaccaccatcaac
cgcagccgactgggccgcgacaagaagaggaccttcccactgtgctttgacgaccacgac
ccagcagtgatccacgagaacgccactcagtccgaagttctggttccgatccgtctggac
atggagattgagggacagaagctcagagacgctttcacctggaatatgaacgagaagctg
atgacgccagagatgttcgctgagatcctttgtgacgacctggacctcaacccgctggcc
ttcgtcccggccatcgcctccgccatccgacagcagatcgagtcttacccgacagacagc
atcctggaggagcagacggaccagagggtcatcatcaagttgaacatccatgttgggaac
atctccctggtggaccagtttgagtgggacatgtcggagagggagaactctccagagaag
tttgccctgaagctttgctctgagctcggcctgggcggagagtttgtcaccaccatcgcc
tacagcatccgcggtcagctgagctggcaccagaggacgtacgccttcagcgagaacccg
ctgcccacagtggagatagccattaggaacacaggcgatgccgaccagtggtgccccctg
ctggagaccctgacagacgcagagatggagaagaagatcagagatcaggacagaaacacg
aggcgaatgaggcgattggcgaacacggcccccgcgtggtag
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