Perca flavescens (yellow perch): 114555848
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Entry
114555848 CDS
T07494
Symbol
lsm1
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm1
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
pflv
Perca flavescens (yellow perch)
Pathway
pflv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pflv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114555848 (lsm1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pflv03019
]
114555848 (lsm1)
Messenger RNA biogenesis [BR:
pflv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
114555848 (lsm1)
mRNA degradation factors
5'-3' decay
Lsm complex
114555848 (lsm1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hira
Motif
Other DBs
NCBI-GeneID:
114555848
NCBI-ProteinID:
XP_028434379
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All DBs
Position
5:complement(38971176..38976485)
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AA seq
133 aa
AA seq
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MNYVPGTASLIDDIDKKHLVLLRDGRTLIGYLRSIDQFANLVFHQTVERIHVGKKFGDIP
RGIFIVRGENVVLLGEIDVEKPCDTVLQQVSIEEILEEQRLQQQAKQETEKVKTAALKDR
GLSIPKADNLDEY
NT seq
402 nt
NT seq
+upstream
nt +downstream
nt
atgaactacgtaccgggcacggccagcctcatcgacgacatcgacaagaagcacctggtg
ctgctccgggatggaagaactctgatcggctacctcaggagcatcgaccagttcgccaat
ttagttttccaccagacagtcgagcgcatccacgtggggaagaagtttggagacatcccc
cgaggaatcttcatcgtgagaggagagaatgtggtgctgctcggagagatagacgtggag
aagccctgcgacacggtgctgcagcaggtctccatcgaggagatcctggaggagcagcgg
ctgcagcagcaggccaaacaggagacggagaaggtcaaaaccgccgccctgaaggaccga
ggcctttccatccccaaagccgacaacttggacgaatactga
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