Perca flavescens (yellow perch): 114555949
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Entry
114555949 CDS
T07494
Symbol
ptch1
Name
(RefSeq) protein patched homolog 1 isoform X1
KO
K06225
patched 1
Organism
pflv
Perca flavescens (yellow perch)
Pathway
pflv04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
pflv00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
114555949 (ptch1)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Patched
Sterol-sensing
Motif
Other DBs
NCBI-GeneID:
114555949
NCBI-ProteinID:
XP_028434531
LinkDB
All DBs
Position
5:complement(22068968..22136792)
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AA seq
1564 aa
AA seq
DB search
MASAANAPSEQENRDPDRPRITRRNRGDYTRNTPLDLEYLQRPSYCDAGFALEQITEGKA
TGRKAPLWLRAKFQRLLFRLGCYIQKNCGKFLVVGLMIFGAFAVGLRAANLETDVEKLWV
EVGGRVNQELKYTRQNIGEEAMFNPQLMIQTPREDGANVLTVDALLQHLDSAIRASRVHV
YLYNRQWKLENLCYKSGELVTETHFMDQIIEKLHPCLIITPLDCFWEGAKLQSGMVYLPG
KDPLQWINFDPKEFIEDLRRANFPVEVFEDMLEKADVGHGYMDRPCLNPADPDCPLTAPN
KNSTKQIDVARALSGGCHGLSRKYMHWQEELIVGGTTKNGSGPLLSAQALQTMFQLMTPK
QMFEHFRGYDEVSHINWNEEKAAAILEAWQRRYSEAVLQSVAANSSQKVLSFTTTTLEDI
LKSFSDISVIRVASGYLLMLAYACLTMLRWDCAKSQGAVGLAGVLLVTLSVAAGLGLCSL
LGISFNAATTQVLPFLALGVGVDDVFLLAHAFSETGQNKRIPFEDRTGECLKRTGASVAL
TSISNVTAFFMAALIPIPALRAFSLQAAVVVVFNFAMVLLIFPAILSMDLYRREDRRFDI
FCCFYSPCANRVIQIEPHAYLDGADGSRYSPPPSYRTPPPSYHTPPPNYSSPPPSYSSHG
FAQQTQITMQSTVQLRTEYDPRTQAFYTTAEPRSQISVQPMNPAPTRSNPNNDYYSSNAS
GSRSSSSSHGNLNNNNSGSRSNGGSRGSATFSHHHPAPPPAAPTSSASSVPQCDAASSTG
QGQENNSSTRDLLSQYGEGSLGLRCLEPPCSRWTLSSFAERHYAPFLLQPTTKVVVIVLF
LCLLGVSLYGTTQVRDGLELTDIVPRDTSEYDFIGAQFKFFSFYNMYVVTQRADYAQKQP
LLHQLHQRFHTVRYVLKEDNGQLPRMWLNYFRDWLQGLQQAFDKDWEAGRITLNSYRNGS
DDGVLAYKLLVQTGRRDKPINFNLLTRQRLVDADGIINPGAFYIYLTAWVSNDPVAYAAS
QANIRPHPPEWLHDRTDSMPETRLSIPAAEPIEYAQFPFYLNGLRETPQFVEAIESVRAI
CSNYSRQGLPSYPNGYPFLFWEQYVSLRHWLLLSISVVLACTFLVCALFLLNPWTAGIIV
LVLSLMTVELFGFMGLMEIKLSAVPVVILIASVGIGVEFTVHVALAFLTAIGDRHKRAVL
ALEHMFAPVLDGAFSTLLGVLMLAGSEFDFIVRYFFAVLAILTVLGVLNGLVLLPVLLSY
FGPYPEVSPVDGRSRLPTPSPEAPHVVHFSVRPHHTTVATTTSGAASDSSDTEYSSNTTA
SGISQELHNYNLPSQRGQTRAEEQQYHLQSNRGRAARTDEERRAGSGHRRSARQPDPPAY
SVSSSSQGCDSGPQPRATQRNSSRDPKNQLHWQALPPARPRMDAFETATEAGGRYGSHGH
REHSAGHRARSSHNPQPNHHVPRHHPNPTPYCQPITTVTASASVTVAVHPAPLSNQGPPA
SSYPGYTATDSFCPSGAEGPEPAFQDPHVPLDTDTGARGVNIEAMELQDLEFEAAESNSG
RRAS
NT seq
4695 nt
NT seq
+upstream
nt +downstream
nt
atggcctcggctgctaatgcgccctccgagcaggaaaaccgagaccccgatcggccgagg
ataacgcggaggaacaggggggactatacccgcaacacaccgctggatttggagtatttg
cagcggccgagttactgcgatgcgggctttgctttggagcaaataacagaggggaaggca
actgggaggaaagcacctctatggctgagagcgaagttccagagacttttatttaggctg
ggctgttacatacaaaagaactgcggaaagtttttggttgtgggcctcatgattttcgga
gcttttgctgtgggcttaagggcagctaatttggagacggacgtggagaaactctgggta
gaagttggtgggcgtgtcaaccaggaactgaagtacacgcggcagaatataggtgaggag
gccatgtttaaccctcagcttatgatccagacgccacgggaggacggagccaatgtttta
acggtggatgcgctcctgcagcacctggactcagctatccgtgctagcagagttcatgtt
tacctttataacagacaatggaaattagaaaacctatgctacaaatcaggagaactagtc
acagaaactcattttatggatcagatcatagaaaagctacatccctgcctcattatcacc
cctttggactgtttctgggagggagccaagcttcagtctggaatggtctatctcccaggt
aaagacccactgcagtggatcaactttgaccctaaggagttcattgaggacttgcgacgg
gcaaactttcccgtggaagtctttgaggacatgttggaaaaggcagatgttggacacgga
tacatggatagaccttgtctgaaccccgctgaccctgactgcccccttactgcgcctaat
aagaactcaactaagcaaatcgacgtggcgcgggccctgagtggcggctgccatggtctg
tccaggaagtacatgcactggcaggaggaactgatcgtaggagggaccaccaagaacggc
agcggacccctgctcagtgcccaggccttacagaccatgttccagctgatgactcccaag
cagatgtttgagcactttcgaggctacgacgaggtttcccacatcaactggaatgaagaa
aaggctgcagctatactggaagcctggcagaggagatattctgaggcggtgctgcagagt
gtggcagcaaattcgtctcagaaggtcttgtcttttaccaccaccactctagaagatatt
ctcaagtctttctcagacatcagtgtcatccgtgtggccagtggatacctgctgatgctg
gcctatgcgtgtctgacaatgctacggtgggactgtgccaagtctcagggggctgtaggg
ctggcgggtgtcctgctggtgacactgtctgtggcagctggcctgggcctctgctctctc
ctgggcatctcctttaatgctgccaccacacaggtgctacccttcttagctctgggtgtt
ggagtggatgacgtcttcctccttgctcatgccttcagtgagaccggacagaacaagagg
atcccattcgaggaccgtacgggggagtgtctgaagaggacaggggccagcgtggctctc
acctccatcagtaacgtcacagcattcttcatggcagccctcatccccatcccagcactc
agagccttttctctacaggctgcagtggtggtggtgtttaactttgccatggtgttgctc
atcttccccgccatcctcagcatggacctctaccgacgagaagaccgacgtttcgacatt
ttctgctgcttctacagtccgtgtgccaatcgtgtgatccagatcgagcctcatgcgtac
ctggatggggcggacggaagtcgttacagccctccaccatcctatcgtacccctccaccc
tcatatcacacgcctcccccgaactacagcagtccccctccttcctacagcagccatggc
tttgcccaacagacccaaatcaccatgcagtccacggtgcagctcaggacagagtacgac
ccccgtactcaggccttctacaccactgccgagcccagatctcagatctctgtgcagccc
atgaacccagctccaactaggagcaaccctaacaacgactattacagcagcaacgcaagc
ggtagcaggagcagcagcagcagtcatggcaatctcaacaacaacaacagtgggagccga
agcaatgggggatctcgaggttctgccaccttctcccatcatcatcctgcacctcctcct
gctgccccgacttcaagtgctagctcagttcctcagtgtgatgcagcctcatcgactggc
cagggccaggagaacaacagctccacacgggacctgttgtcccagtacggagaaggctca
ctgggccttcgctgcctcgagcctccctgctcccgctggaccctgtcctcttttgctgag
aggcactatgctccgttccttctgcagcccaccaccaaggtggttgtgattgtgctgttc
ctctgcctgctgggagtcagtctgtatgggaccacccaggtgagggatggcctggagttg
acagacatcgtgcccagagacaccagcgagtacgacttcatcggtgcccagttcaagttc
ttctccttctacaacatgtatgtagtgacgcagcgggctgattacgcccagaaacagcct
ctgctgcaccagctccaccagaggttccacactgttcgctacgtgctgaaggaggacaat
ggacagctgccccgcatgtggcttaactacttcagggactggctgcaaggtctccagcag
gcttttgacaaggattgggaggccggccgcatcaccctcaacagctacaggaatggctct
gatgatggcgtcctggcatacaagcttttggtgcaaacgggacgcagggacaaacccatc
aacttcaacctgctgactcgtcagaggcttgtcgatgcagatgggatcatcaaccccggg
gctttctacatctacctaaccgcctgggtcagcaatgatcctgtggcgtacgccgcctcg
caggccaacattcgcccacaccctcctgagtggctccacgaccgtactgactccatgcct
gagacacgcctcagcatcccagctgctgagcccatcgaatacgcacagttccccttctac
ctcaacgggctccgggagacaccacagtttgtggaggccatcgagagcgtgcgggctatc
tgcagcaactatagccgacaaggcctaccctcctaccccaacggctaccctttcctgttc
tgggaacagtatgttagtctgcgccactggctcctgctgtccatcagtgtcgtgctcgcc
tgcacctttctggtctgtgccctcttcctgctcaacccgtggaccgccggcatcatagtg
ttggttctttctctcatgactgtggagctgtttggcttcatggggctgatggaaatcaag
ctgagtgctgtccctgtggtcattctcatcgcctctgtaggcattggagtggagttcacc
gtccacgtagccctggcgttcctgacagccataggggatcgtcataagcgggcagtgctg
gcattggagcacatgtttgctcccgtactcgatggagccttttccaccttattaggtgtc
ctaatgctcgctggctctgagtttgactttatcgtcaggtatttctttgccgtgttggcc
atcctaacagttcttggagtactgaatggactggtccttcttccagtattactgtcatac
tttgggccctatccagaggtgtctccagtcgatggtcgtagcaggttacccaccccgtcc
ccagaagcccctcacgtggtccacttctcagttcgtcctcaccacaccaccgtggccacc
accacctctggtgcagcttctgactcgtcagacacggagtacagctctaacaccacagcg
tccggtattagccaggagctgcacaactacaacctgccctcacaaagaggacaaactcga
gccgaggagcagcagtaccacctccagtccaacaggggcagagcagccaggacagatgag
gaaaggagagcaggatcagggcataggcgctcagctaggcagcctgaccctccggcctat
tctgtgtcttcgtcctctcagggttgtgattctgggccccagcccagggctactcagcgt
aacagcagcagggaccccaagaaccagctgcactggcaggccctgcccccagcccgcccg
cgcatggacgcttttgaaactgctactgaggctgggggccgttatggctcacacggccat
agagaacactcagcaggccacagagcccgctcttcccacaacccacaacccaatcaccac
gtcccgcgccatcaccccaaccccaccccgtattgccaacccatcaccacggtaacagcg
tcagcctccgtcactgtcgccgtgcacccggcccccttgtccaaccagggcccccctgct
tcctcttacccaggatacactgcaacagacagtttctgcccatcaggggcggaggggcca
gagcctgcctttcaggacccacatgtgccactggataccgacacaggggccagaggagtc
aacatagaggctatggagcttcaagatttggagtttgaggcagctgagagtaacagtggc
agacgggcaagctga
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integrated database retrieval system
