Perca flavescens (yellow perch): 114557402
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Entry
114557402 CDS
T07494
Symbol
dhx16
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
pflv
Perca flavescens (yellow perch)
Pathway
pflv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pflv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114557402 (dhx16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pflv03041
]
114557402 (dhx16)
Enzymes [BR:
pflv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
114557402 (dhx16)
Spliceosome [BR:
pflv03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
114557402 (dhx16)
Complex C
U4/U6.U5 tri-SnRNP related factors
114557402 (dhx16)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
AAA_30
Cas3-like_C_2
Flavi_DEAD
PWI
nSTAND3
ABC_tran
Motif
Other DBs
NCBI-GeneID:
114557402
NCBI-ProteinID:
XP_028436632
LinkDB
All DBs
Position
6:complement(12276216..12293867)
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AA seq
1053 aa
AA seq
DB search
MANLEQWVNDRLHDILGLSDRYVSQFMIGTARKASSPQDFVTRLEQTGTIDIEPSVVAFA
QELFDKIPRKQVVEKPARAMEREAIEMDRKNRTYTLLEDSDSDGDTVIEKQKGKKKSKDK
DRGNRRKHIRQKKESESSSEDEASKRGSSGQGEHKSLNKEDEEEEWEKEERERQHDIEER
DAFAERVKQKDKDKTRNITERTDKKAYEEAQKRLKMAEDDQKNMLPELRKRSRWDYLKKR
EAEKLEDLEAEIKDDEYLFHTDELTEKERKELEYKRTLRDLAKDYKKAGAKEQEERKNRY
YMPEEKRSKEMPQRDLELEETPMELGGEQGRWEEERLKTASLSFGAKREREQGMRQEQEK
YQLILEEEEMIDFVSTAMTMKGTRTEEEQEALAVSQAELKKQSMQEVRRSLPIFPYREDL
LAAIHEHQILVIEGETGSGKTTQIPQYLLEDGYTQGGMKIGCTQPRRVAAMSVASRVAQE
MSVKLGNEVGYSIRFEDCTSERTVLKYMTDGMLLREFLTEPDLASYSVIIIDEAHERTLH
TDILFGLIKDIARFRSDLKVLVASATLDTERFSCFFDDAPVFRIPGRRFPVDIFYTKAPE
ADYLEACVVSVLQIHVTQSPGDILVFLTGQEEIEACCELLQERCRRLGSKIAELLVLPIY
ANLPSDMQAKIFNPTPPGARKVVVATNIAETSLTIDGIIYVIDPGFCKQKSYNARTGMES
LIVTPCSRASANQRAGRAGRVAAGKCFRLYTAWAFKHEMEESTVPEIQRTNLGNVVLLLK
SLGINDLIHFDFMDPPPHETLVLALEQLYALGALNHLGELTKLGRRMAELPVDPMLSKMI
LASEQYKCSEEVLTIAAMLSVNNSIFYRPKDKVVHADNARMNFVVPGGDHLVLLNVYTQW
LESGYSTQWCYENFIQFRSMRRARDVRDQLEGLMDRIEVEVVSSQGDSLPIRKAVTAGYF
YHTARLSKGGYKTVKHQQTVYVHPNSSLFEEQPRWLIYHELVFTTKEFMRQVIEIDSGWL
LEVAPHYYKSKELEDSSSKKMPRKQGKTKEELG
NT seq
3162 nt
NT seq
+upstream
nt +downstream
nt
atggctaatctagagcagtgggtgaatgaccgtctccatgacatcctcgggttgagtgac
agatatgtgtctcaattcatgatcggcactgcacggaaagcgtcgagtcctcaagacttt
gtgactcgtctcgagcagacgggcacgattgacatcgaaccgagtgtggttgcctttgcg
caggagctgtttgacaagattcctcgcaagcaggttgttgagaaaccagcccgtgcaatg
gaacgagaagccattgaaatggacaggaagaatcgcacgtacacattactggaggacagc
gacagtgatggagacactgtgatagagaagcagaaagggaaaaagaaaagcaaggacaaa
gacagaggaaaccggaggaagcacatcagacagaagaaagagagtgagtcgtcaagtgag
gacgaagcatctaaaaggggcagttcaggccaaggggagcacaagtctctcaataaagaa
gatgaagaggaagagtgggagaaggaagagcgagagcggcagcatgacattgaagaaaga
gatgcatttgccgagcgagtgaagcagaaagacaaagacaagacccgcaacataacagag
aggactgacaaaaaggcttatgaggaagctcagaagaggctgaagatggctgaagatgat
cagaagaacatgttgccagagttgaggaagcgctctcgttgggattatctaaagaagaga
gaggcagagaagctggaggacctggaggcagagatcaaagacgatgagtaccttttccat
acagatgagctgaccgagaaggagagaaaggagttggaatacaaacgcacccttcgtgac
ctggctaaagattacaaaaaggctggtgccaaggaacaggaggagaggaagaacagatac
tatatgccagaagagaagagaagcaaggagatgccgcagagggacctggagctggaggaa
actcccatggagctgggaggagagcaaggccgctgggaggaggagaggctgaagacggcc
tccctcagcttcggcgccaagagggagcgagagcaagggatgaggcaggagcaggagaag
taccagctgatcctagaggaggaagagatgatcgactttgtcagcactgccatgaccatg
aagggaactcggacggaagaggagcaggaggccctggctgtgtcccaggcggagctgaag
aaacagtccatgcaggaggttcgacgcagtctgcccatcttcccctacagagaggacctg
ctagctgccatccacgagcaccagatcctggtcattgagggggagacgggctcgggaaag
accacccagatcccgcagtacctcctggaagacggctacacacaaggaggcatgaagatc
ggatgtacacagcctcgcagagtggcagccatgtcggtggcaagcagagtggcacaggaa
atgagcgtcaagcttgggaatgaggtgggttatagtattcgttttgaggactgcacatca
gagagaacagtgctcaagtacatgacagacggcatgctgctccgagagtttctcaccgag
cccgacctggccagctacagtgtgatcatcatagatgaagcccacgagcgaacactccac
acagacatcctctttggtctgatcaaagacatcgccagattcagatcagacctgaaggtg
ctggtggccagcgccactctggacaccgagcgcttctcctgcttctttgacgacgcacca
gtcttcaggatccctggcaggaggttccccgtcgatatcttctacactaaagctccagag
gccgactacctggaagcctgcgtggtgtcggtgctacagatccacgtcacccagtctcct
ggagacattctagtcttcctcactggacaggaggagatcgaagcgtgttgcgaactgctc
caggagagatgccggcggcttggatctaagatagcagagctgctggttcttcccatctac
gccaaccttccatcagacatgcaggcgaagatcttcaaccctactccacctggagcccgt
aaggtggtggtcgctaccaatatagcagaaacttcactgaccatagatggcatcatctac
gtcattgacccaggtttctgcaaacaaaagagttacaacgctcgcaccggcatggagtca
ctcattgtcacaccctgttcacgggcttcggccaatcagagagcaggccgtgcaggcaga
gtggctgctgggaaatgtttcaggctttacacagcctgggcctttaaacatgagatggaa
gaatcgactgtacccgagattcagaggaccaacttgggaaatgtagtcctgctgctaaag
agtctaggcatcaatgacctcattcactttgacttcatggacccacctcctcatgagact
ctggtcttggcgctggagcagctctatgctctgggagcactcaaccacctgggagagctc
accaagctgggtcgcaggatggctgagctacccgtggaccccatgttgagcaagatgatc
ctggcctccgagcagtacaagtgttcggaggaagtgttgacaattgcggccatgctgtcg
gtgaacaactctattttctaccggcccaaagacaaagtggtgcacgccgacaacgccagg
atgaactttgtggtgccagggggagaccacctggtgctgctcaacgtgtacacacagtgg
ttggagagtggttactccacacagtggtgctacgagaacttcatccagttccgctccatg
agaagagcccgggacgtccgggaccagctggagggtctgatggatcgtattgaggtggag
gtggtcagctcccagggagacagcttacccattcgcaaggcggtgacggcaggatatttc
tatcacacggcgcgactgagcaaaggcggctacaagacagtgaagcaccagcagacggtc
tacgtccaccccaacagctctctgttcgaggagcagccccgctggctcatctaccacgag
ctggtcttcaccaccaaggagttcatgagacaggttattgagatagacagcggctggctg
cttgaagtggctcctcactactacaagagcaaagagctggaggacagcagcagcaagaag
atgccccgcaagcaaggaaaaacaaaagaggagctgggctga
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integrated database retrieval system
