Perca flavescens (yellow perch): 114559072
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Entry
114559072 CDS
T07494
Symbol
prpf6
Name
(RefSeq) pre-mRNA-processing factor 6
KO
K12855
pre-mRNA-processing factor 6
Organism
pflv
Perca flavescens (yellow perch)
Pathway
pflv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pflv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114559072 (prpf6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pflv03041
]
114559072 (prpf6)
Spliceosome [BR:
pflv03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
114559072 (prpf6)
Complex C
U5 SnRNP specific factors
114559072 (prpf6)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP1_N
TPR_14
TPR_19
HAT_PRP39_N
Suf
TPR_16
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_17
TPR_2
TPR_8
TPR_1
FAT
ARM_TT21_C
TPR_9
Mt_ATP-synt_B
Motif
Other DBs
NCBI-GeneID:
114559072
NCBI-ProteinID:
XP_028439297
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All DBs
Position
7:16033044..16049111
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AA seq
964 aa
AA seq
DB search
MAHAAGKQGPKIVSKSSAGGTGAAGAGGGPPIMPLASPLMGKKKKPFLGMPAPLGYVPGL
GRGATGFTTRSDIGPARDANDPVDDRHAPPGKRTVGDQMKKNQDDDDEDLNDTNYDEFNG
YAGSLFSSGPYEKDDEEADAIYAALDKRMDERRKERRELREKEEIEKYRMERPKIQQQFS
DLKRKLSEVSEEEWLSIPEVGDARNKRQRNPRYEKLTPVPDSFFSKHLQTGENHTTVDPL
QGLGGLNTPYPGSMTPGTGELDMRKIGQARNTLMDMRLSQVSDSVSGQTVVDPKGYLTDL
NSMIPTHGGDISDIKKARLLLKSVRETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTE
MCPKSEDVWLEAARLQPGDTAKAVVAQAVRHLPGSVRIYIRAAELETDIRAKKRVLRKAL
ENVSKSVRLWKTAVELEEPEDARIMLSRAVECCPTSVELWLALARLETYENARRVLNKAR
ENIPTDRHIWITAAKLEEANSNTQMVDKIIDRAITSLRANGVEINREQWIQDAEECDKAG
SVATCQAVIRAVIGIGIEEEDRKHTWMEDADSCVAHGALECARAIYAHALQVFPSKKSVW
LRAAYFEKNNGTRESLEALLQRAVAHCPKAEVLWLMGAKSKWLAEDVPAARSILALAFQA
NPNSEEIWLAAVKLESENNEYERARRLLAKARSSAPTARVFMKSVKLEWVLGNIEAAQEL
CTEALKHYEDFPKLWMMRGQIEEQCENMDKAREAYNQGLKKCPHSGGLWLLLSRLEERVG
QLTRARAILEKARLKNPQGPDLWLESVRLEFRAGLKNIANTLMAKALQECPNSGILWAEA
VFLEARPQRKTKSVDALKKCEHDPHVLLAVAKLFWSERKITKAREWFLRTVKIEPDLGDA
WALFYKFELQHGTEEQQEEVRKRCENAEPRHGELWCAESKHVLNWQKKTGEILAEVASKI
KNTF
NT seq
2895 nt
NT seq
+upstream
nt +downstream
nt
atggcccacgctgcaggaaaacaaggacctaaaattgtctccaagtcatctgcgggaggc
accggggcggcgggggctggtggtgggcccccgataatgcccctcgcctctccgctcatg
gggaaaaagaagaagccgtttctggggatgcccgctccgctgggctacgtccccggtctg
ggtagaggtgcaactggtttcaccacccgatctgatatcggtcctgctcgtgatgccaac
gatccagtggatgaccgacatgcacctccagggaagaggacagttggggaccaaatgaaa
aagaaccaggatgatgatgacgaagatctgaacgacacaaactatgatgagtttaatgga
tatgcaggtagcttgttctccagtggtccctatgagaaggatgatgaagaagcagatgcc
atatatgcagcactggacaagaggatggacgaaagacgcaaagaaagaagggagctgaga
gagaaggaagaaatcgagaaataccgtatggagcgacccaaaatccagcagcagttttca
gatctaaagaggaaattgtcagaggtgtcagaggaggagtggctgagcatccctgaggtg
ggagatgccaggaataagcgccagagaaatccccgctatgagaaactcacccctgtcccc
gacagcttcttttccaaacacctgcagactggagaaaaccacaccactgttgaccctctg
caagggctgggaggtctgaacacaccttacccaggaagtatgacaccaggaacaggagag
ctggacatgaggaaaatcggtcaggccaggaacacacttatggatatgagactcagccag
gtgtctgactcggtgagtgggcagacagtggtggatcctaagggttacctgacagatctc
aactccatgatccccacacatggaggagacatcagtgacatcaagaaggctcgtctacta
ctgaaatctgtgagggagaccaatccccatcacccgcctgcctggattgcctctgccagg
ctggaggaggtgaccggaaaactgcaggtggccaggaacctgatcatgaaaggcacagag
atgtgtcctaagagtgaggatgtgtggctggaggcagccaggctccaacccggagacaca
gccaaagccgtggtagcccaagctgtccgccacctgcctgggtccgtccgcatctacatc
agagctgcagagctggagacagacatcagggccaagaaacgagtcctcaggaaggccctg
gagaatgtgtcaaagtcagttcgactgtggaagacagctgttgagctggaggagccagag
gatgccaggatcatgcttagcagagctgtggagtgttgccctacaagtgtggagctgtgg
ttggcactagcccggttagagacgtacgagaacgcacgtcgtgtcctgaacaaagctcga
gagaacatccctactgatcgccacatctggatcactgctgctaaattggaggaggccaac
agcaacactcagatggtggacaagatcattgaccgagcaatcacttctctgcgtgccaac
ggcgtggagatcaacagagagcagtggatacaggatgcagaggagtgtgacaaagcaggc
agtgtagctacctgccaggccgtgataagggccgtcataggcattggcatcgaggaggag
gaccgcaaacacacctggatggaggatgcagatagttgtgtggcccatggggcgctggag
tgtgccagggccatctatgcccatgctctgcaggtgttccccagtaaaaaaagtgtctgg
cttagagctgcttactttgagaagaataacggcaccagggagtctttggaggccctgctc
caaagggccgtggctcactgtcccaaggcagaggtcctgtggctgatgggggccaagtcc
aagtggctggctgaggatgtgcctgcagctagaagtattcttgctctggccttccaggct
aacccaaacagtgaagagatctggctggctgctgtcaagctggagtctgagaataacgaa
tatgaaagagcccgtcgactgctggccaaggcccgcagcagtgccccaaccgccagggta
tttatgaagtcagtcaagttggagtgggtgttggggaacatagaagctgcccaggagttg
tgcaccgaggccctgaaacactacgaggacttccccaaactttggatgatgagaggccag
atagaagagcagtgtgaaaacatggataaggccagagaggcgtacaaccaagggttgaaa
aagtgtccccactcgggcggcctgtggttgctgctgtctcgtcttgaagagagagtggga
cagctgaccagagccagagcaatcctggaaaaggcccgactcaagaatccccagggcccc
gacctgtggttggagtcggtcagactggagttccgggctggactgaagaacatcgccaac
acactgatggccaaagccctgcaggaatgccccaattcaggtatcctgtgggctgaggca
gtgtttttggaggcaaggccccagaggaagactaagagtgtggatgctttgaagaagtgt
gaacatgatccccatgtcttgctcgctgtagccaagttgttctggagtgagcgtaagatc
accaaagccagagagtggtttctgaggaccgtaaagatcgagccagacctgggagatgct
tgggctctcttctacaagtttgagctgcagcatggcaccgaggaacagcaggaagaggtg
cgaaagcgctgtgagaatgcggagcctcgccatggagagctgtggtgcgccgagtccaaa
cacgtcctgaactggcagaagaagacaggagagatcttagcagaggtagccagcaagatc
aagaacacattctga
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