Perca flavescens (yellow perch): 114559164
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Entry
114559164 CDS
T07494
Symbol
pan2
Name
(RefSeq) PAN2-PAN3 deadenylation complex catalytic subunit PAN2 isoform X1
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
pflv
Perca flavescens (yellow perch)
Pathway
pflv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pflv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114559164 (pan2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pflv03019
]
114559164 (pan2)
Enzymes [BR:
pflv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
114559164 (pan2)
Messenger RNA biogenesis [BR:
pflv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
114559164 (pan2)
mRNA degradation factors
3'-5' decay
Pan complex
114559164 (pan2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAN2_N
UCH_1
RNase_T
UCH
WD40_CDC20-Fz
Beta-prop_THOC3
WD40_like
Motif
Other DBs
NCBI-GeneID:
114559164
NCBI-ProteinID:
XP_028439462
LinkDB
All DBs
Position
7:9852729..9868549
Genome browser
AA seq
1224 aa
AA seq
DB search
MMNFDGLDAGMGEYPPSLHGTLDTGMEPSMDPHLNPSLLQGVELDPEGLAVTGPEPVHLM
EGMFSELHSAVSEVGIPVTATHFDLQEEMLWMGNHRGHVTSFFGPTMGRHSSFQAHAADD
IRHIQSLETGVLFLSKCNLKCHTRGGLVMFDYPMEEGADMHSLLMTDNNTLLIGGLQNYA
VEFDLNTVQETQKFTVEVPGVAIMRQTGRFFFCGHTSGKITLRDLRSFKTEHEFDAFSGS
LSDFDVHGNLLAACGFSSRGMNGLACDRFLMVYDLRMMRAVTPLQVHVDPVFLRFIPTYT
SRLAIISQTGQCQFCEPTGLANVADIFHVNTVGQVLMSFDVSSSKQALAFGDSGGCVHLW
SDAPEVSFNDYSRETEFALPCLVDTLPQLDWNHDLLPLSLIPMPLTSTEQLLSEWSTAVA
TPSPRRAPPVDPEILRTMKTVGFIGYAANPRTRPRNQVPYKVKDVELDYDNYNQVPESPI
GRDEEPHLYMVPKKYRKVTIKYSKLGLEDFDFKHYNRTLFAGLEPHIPNAYCNCMIQVLY
FLEPIRCLVQNHLCQKEFCLACELGFLFHMLDLSRGDPCQASNFLRAFRTIPEASALGLI
LADSDEQTGKARLGRLIQSWNRFILTQLHQETQEQEGPQAYRGASSSSLGSSGESAIGKL
FGCEVENSSLCRCGKETVRSSLTLLFTMHYPEQNSQEKTVKEYDFAEILKKSICLEQSTQ
AWCENCEKYQPTVQTRNIRCLPDVLVINCEVNSAKEAEFWKVQAEYAFNKAMQKEAQEPA
KPKEPPPMPTEWCLDSGITYHTNTVRPCSGEDICSMEGITFDTRAEDLRHVWIPLTLKMS
ISKSQGLEISSWPEGEELSAAEEEEGASVYDLVVTVPHILDARAGGNLVAHIKVGETYHQ
RKEGVTHQQWYLFNDFLIEPIDKTEAAQFDVSWKVPGILYYAKRNYHTKYDLRIKNPIDA
SVLLTEASLARKQRKSHATFIPLMVSEMPQANDLVGLDAEFVTLNQEEAELRSDGTKSTI
KPSQMSVARITCVRGQGPNEGVPFIDDYISTQEQVVDYLTQYSGIKPGDLDAKISSKHLT
TLKSTYLKLRFLIDTGVRFVGHGLQKDFRVINLLVLKDQVVDTVYLFHLPRKRMISLRFL
AWYFLDLSIQGETHDSIEDARTALQLYRKYLELSRGGGNDEVRKVLKGLYEKGRQMDWKV
PESDTGDGQGSPKSAAVFPSVMGL
NT seq
3675 nt
NT seq
+upstream
nt +downstream
nt
atgatgaactttgacggtcttgacgctgggatgggtgagtacccacccagccttcacggg
actctggacacggggatggagccctccatggacccccaccttaaccccagtttactgcag
ggtgtggaacttgacccagaggggcttgccgtgacaggcccggagcctgtgcacctcatg
gaggggatgttctcagagctacacagtgcagtttcagaagttggcatcccagtcactgca
acacattttgatctccaggaggaaatgctctggatgggaaaccacagaggtcatgtgacc
tcgttcttcggacctacaatgggccgccactcctcttttcaagcacatgcagcagatgac
atcagacacattcagagtttggaaacaggcgtcctgttcctttccaagtgtaaccttaaa
tgccacactcgtgggggccttgttatgtttgattatccgatggaggaaggagccgatatg
cacagtcttctcatgaccgataacaacaccttgctcataggtggattacaaaactatgcg
gttgaattcgacttgaataccgttcaagaaactcaaaagttcactgttgaggtacctgga
gtggcaataatgcgtcaaaccggccgtttctttttctgtggacacacctctggcaagata
acccttcgggacttgcgtagcttcaagacggagcatgagtttgatgcgttctctggcagc
ctctcagacttcgacgttcatggaaaccttctggctgcgtgcgggttctccagccgaggg
atgaatgggttggcgtgcgaccgattcctcatggtgtacgacctccgtatgatgcgagct
gtaacgccccttcaggtgcatgtggaccccgtcttcttgcgcttcattccgacctacacg
tcacgcctggcgatcatctcccagacaggtcagtgccagttctgtgagcccactggactc
gccaatgtggcagacatttttcacgtcaacactgtgggccaggtgctcatgagttttgat
gtatcgtccagcaaacaagccttggccttcggggactccgggggatgtgtgcacctgtgg
tcggatgctccagaggtttcatttaatgattactcccgggagacagagtttgctctgcct
tgccttgtggacacgctgcctcagctggactggaaccacgacctgctgcccctctcgctt
atccccatgccactgaccagcacagagcagctgctgtcagaatggtccactgcagtggct
acacccagccccagacgagctccccctgtggacccagaaatcctgcgcacaatgaaaacg
gttggcttcattggttacgcagcaaatcctcgtacccgcccgcggaaccaggttccttac
aaagttaaagatgtggagcttgattatgataattacaaccaggtccctgaatcaccaatt
gggcgtgatgaagagccacacctctacatggtgcccaaaaaatacagaaaggtcacaatt
aaatactccaaacttggactggaggactttgacttcaaacattacaacagaaccttgttt
gctggcctggagcctcacatccccaacgcctactgcaactgcatgatccaggtattatat
ttcctggagccaatccggtgtctagtgcagaatcatttgtgccagaaggagttttgcttg
gcctgtgagctcggcttcctcttccacatgttggatttgtcacgaggagatccatgtcag
gccagtaacttcctccgagcatttcgtaccatcccagaagcctcagcgctgggtctcatc
cttgctgactcggatgagcaaactgggaaggccagactcggccgcttaatccagagctgg
aaccgcttcatcctcacccagctccaccaggagacacaggaacaggagggcccacaggcc
tacaggggagccagcagcagttctctgggttcctctggggagtccgccatcgggaaactg
tttggatgtgaagttgagaacagcagcctgtgtcgctgtggtaaggagacggtccgctcc
tccctcacgctgctcttcaccatgcattaccctgaacagaactctcaagagaaaactgta
aaggaatacgactttgctgagatcttgaagaaaagcatctgtctggagcagagcactcag
gcgtggtgtgaaaactgtgagaagtatcaacccacagtgcagacacgcaacatccgatgt
cttccagatgtgctggtcatcaactgcgaggtgaacagtgctaaagaggctgaattctgg
aaggttcaggcggagtacgccttcaataaggccatgcagaaagaggcgcaggaacctgca
aaacccaaagagcccccacccatgcccaccgagtggtgcttggactctggaataacatat
cacacaaacactgtacgtccttgtagcggggaggacatatgcagcatggagggcatcacc
ttcgacacgcgggcggaggatctgcgacatgtctggatccctctgactctcaagatgtcc
atcagcaaaagtcagggactggagatcagcagctggcccgaaggagaggagttaagtgct
gctgaagaggaggagggcgcctctgtttatgacttggtggtcacggtgcctcatatcctg
gacgctcgcgcaggtgggaacttggttgcacacatcaaggtgggagagacgtaccatcaa
agaaaggagggagtcacacatcagcagtggtacctcttcaatgatttcttaattgagcca
attgacaagaccgaagctgctcagtttgatgtgagctggaaagtgccaggcattctgtat
tatgccaagaggaactaccacaccaaatatgacctccgcattaaaaatcccatagacgcc
agcgtgctgctgacggaggcctcgttggctcggaagcagcggaagagtcacgccactttc
atccccctcatggtcagcgagatgccgcaggccaatgacttggtggggctggacgctgag
tttgtcacgctcaatcaggaagaggcagagcttcgcagtgacggcaccaagtcgaccatc
aagcccagccagatgtccgtggccaggatcacttgtgtgaggggccaggggcccaacgag
ggggtgcccttcattgatgactacatctccactcaggagcaggtggtggactatttgaca
caatattctggcatcaaaccaggagacttggatgcaaagatttcttcaaagcatttgacc
acactgaagtccacgtacttaaagctgcgcttcctcatcgacacgggagtccgctttgtt
ggtcacggtttacagaaggactttcgggtcattaatctactggttctaaaggaccaagtc
gtcgacactgtctacctgttccatttaccccgaaagaggatgatttctctgagatttctc
gcctggtactttctagacctcagcatccagggggaaacccacgacagcatagaagacgca
cgcaccgctctgcagctctacaggaagtacctggagctgagtcgcgggggggggaacgac
gaagtgaggaaggtcctgaagggactgtacgaaaaaggccgccagatggactggaaagtc
ccggaatcggacaccggagatggtcaaggtagcccaaaaagtgctgctgtgtttccctct
gtgatggggctgtga
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integrated database retrieval system
