Perca flavescens (yellow perch): 114560252
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Entry
114560252 CDS
T07494
Symbol
ighmbp2
Name
(RefSeq) DNA-binding protein SMUBP-2
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
pflv
Perca flavescens (yellow perch)
Brite
KEGG Orthology (KO) [BR:
pflv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pflv03009
]
114560252 (ighmbp2)
03012 Translation factors [BR:
pflv03012
]
114560252 (ighmbp2)
Enzymes [BR:
pflv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
114560252 (ighmbp2)
5.6.2.5 RNA 5'-3' helicase
114560252 (ighmbp2)
Ribosome biogenesis [BR:
pflv03009
]
Eukaryotic type
Other ribosome biogenesis factors
114560252 (ighmbp2)
Translation factors [BR:
pflv03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
114560252 (ighmbp2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
AAA_30
R3H
AAA_19
zf-AN1
Viral_helicase1
DEAD
Helicase_RecD
ResIII
nSTAND3
AAA_22
AAA_16
UvrD-helicase
IstB_IS21
SLFN-g3_helicase
Flavi_DEAD
ABC_tran
DnaB_C
NPHP3_N
AAA_25
AAA_28
ATPase
PhoH
AAA
Zot
SRP54
AAA_31
Med28
HEM4
SpoIIAA-like
ATPase_2
Motif
Other DBs
NCBI-GeneID:
114560252
NCBI-ProteinID:
XP_028441314
LinkDB
All DBs
Position
8:21760754..21768672
Genome browser
AA seq
992 aa
AA seq
DB search
MAIEQFVLKTLELLQEEREAEIEETRIWQENISLKDLQNKGVCLLKLQIGSQSTGLYGRT
VIVLEPRKYLGFSSLPSNSFGPGDIVGLYDTGGCTAASQIGTGIVTRVSQASISVAFDDS
KDGLSFDTDALHNLLKLANDVTYKRMKNALNALNGYSNGPAANLINVLFGDTKPSSQSQP
NEVKFFNSNLDDSQREAVSFTLSQRELAVIHGPPGTGKTTTVVEIILQAVKQGQKVLCCA
PSNVAVDNLVERLARCKAKVLRLGHPARLLESIQKHSLDAILAQSENANIIADIRKDMDK
AIKGIKKMREKGDRVNFKREMGELRKELKTRESTAIAQILKSADVVLSTNTGASGDGPLK
FLPAGHFDWVVIDECAQALESSCWIALLRARKCILAGDYKQLPPTIKSQRAASKGLSLSL
MERLIQMYGDSVVRMLTVQYRMHSAIMEWTSKEMYQGRLTAHSSVERHLLKDLPEVTCVE
ETSTPLLLIDTAGCGLSEMEVTDEQSKGNQGEADIVELHIKALTEAGVKAKDIAVIAPYN
LQVDLLRQKLSARHPELEIKSVDGFQGREKEAVVLSLVRSNRKGEVGFLAEDRRINVAVT
RARRHIAVVCDTQTVQNHAFLKSLINHMTEFGEVRTAFEYISDIVPQNYTRDHKDTKTST
SASSSTSTKQKVKDQPPSRAKQQQKKSTGSSSNGNAAGTEKNTKSCISTLTEEEQKKNRY
AEIRAQVESFLEASNQSELQFPSSFNSHDRLLVHQIAEELGLVHESKGEGKDRCITVARP
LVSTPAEEPRQAEEAQEEEAVPNPQIEPLCQPPLDLKSLHLERMKREQQKREENAQQKKQ
QNNVPPAQAQSLKKPKSAKGKSRMKAGACGIAAAAVPDDDFDTLINAVIKADSVCSFVKC
KASVLTLGQLCLFCNRQYCLSHHIPEVHGCGDKAKSHARMRISKEGVLYAGSGKKDKSMD
PSKKAYLQRKLDSKLKDMSSQRKPKKDKENES
NT seq
2979 nt
NT seq
+upstream
nt +downstream
nt
atggcgattgaacaatttgtgttaaagacgcttgagcttctgcaggaggagagggaggct
gaaatagaggagaccaggatatggcaggagaacatctctctcaaggatcttcaaaataaa
ggagtatgccttctgaaattgcagataggaagtcagtccacaggcctgtatggtcgcaca
gtcatcgtcctcgagccaagaaagtatcttggtttctcatctctgccaagcaacagcttt
ggacctggggacattgttggcttgtatgacactggcggatgcaccgcagcttcacagatt
ggcacaggaatagtgacgagggttagccaagcttctataagtgtggcctttgacgattca
aaggatggccttagctttgatacagatgctcttcacaacctcttaaagttagcaaatgac
gtcacctacaaacgaatgaaaaatgccttgaatgcattaaatggatacagcaatggacca
gctgccaatctaataaatgttctctttggcgacacaaaaccttcttctcaatcgcagcca
aatgaagttaaattctttaactcaaacctggatgattcccagagagaagctgtgtccttt
actctgtctcagagagaactggctgtgattcatggaccaccaggcactgggaaaaccacc
acagtggtggagatcatcctgcaagcagtcaaacaaggccaaaaggtcctgtgctgtgcc
ccctctaacgtggctgtggataatttagtggagaggttagccaggtgcaaggcaaaggtc
ctcaggctaggtcaccctgccagactgcttgagtccatacagaaacattcactagacgcc
atccttgctcagagtgaaaatgcaaacatcatcgcagacatccgtaaagacatggataaa
gcaattaagggaattaagaagatgcgtgaaaaaggagaccgggtgaactttaaaagggaa
atgggggagctaagaaaagagctgaaaaccagggaatcaacagccattgcccagatccta
aaaagtgcggatgttgtgttatcaactaacacaggtgcttctggtgatggccctctgaag
ttcctgccagcagggcattttgattgggtggtgatagacgagtgtgctcaggccctggag
agcagctgctggatcgccctgctcagagcgcgcaagtgcattctggctggagactacaag
cagttaccgcctactatcaaatcacaaagggctgcatcaaaaggcttgtctctcagtctc
atggagcgactcatccagatgtatggggactcagtggtccgtatgctaacagttcagtac
cgcatgcacagtgccatcatggagtggacctccaaagagatgtaccagggaagactaacc
gctcacagctctgtagaaagacacttgttaaaagatctaccagaagtcacctgcgttgaa
gagaccagcacgccacttcttcttatcgacactgcgggctgcggtctgagtgagatggag
gtcacagatgagcagtccaaaggcaatcaaggtgaggcagacattgttgaactgcacata
aaggccttgactgaagctggggttaaggctaaagacatcgctgttattgctccctacaat
ctacaagttgatcttctgcgtcagaaactttctgcgaggcatccggagctggagataaag
tcagtggatggatttcagggcagagagaaagaggctgtggtgttgtcattagttcggtcc
aacagaaagggggaagttggatttctggcagaggacagaaggattaatgtggctgttaca
cgtgcgagacgtcacatcgctgttgtgtgcgacacccagactgtccagaatcatgctttc
ctgaagtccctgatcaatcacatgactgagtttggcgaggtcagaacggcatttgagtac
atcagcgacatcgtgccacaaaactacacccgcgaccacaaagacacaaagacttctacg
tctgccagcagctccacgtccaccaaacagaaggtcaaagatcagcctcccagcagggcc
aagcaacaacaaaagaagtccactggtagcagcagtaatggaaatgctgctggtacagag
aagaacaccaagtcctgcataagcacactgactgaggaagagcagaagaagaacagatat
gctgagatcagagcgcaggtggagagctttctagaggcctcaaatcagagtgaactacag
ttcccatcatcgtttaactctcatgaccgcctgctggtgcaccagattgctgaggagctg
ggcctcgtgcatgagagtaagggcgaggggaaagacaggtgtattactgttgccaggccc
ctggtgtcaacaccagctgaggagccaagacaagctgaagaagctcaggaagaagaagca
gtccctaatccccaaatagagccgctgtgtcaacctccattagacctcaaaagtttacat
ttagagcgaatgaagagggagcagcagaagagggaagaaaatgctcaacaaaaaaagcaa
cagaacaacgttccaccagctcaggcccagtcattaaagaagcccaagtcggctaaagga
aagagccgaatgaaggcaggcgcctgcggcatcgctgctgccgccgttccagatgatgac
tttgacacacttatcaacgctgtcatcaaggccgacagcgtatgcagttttgtcaagtgt
aaagcttccgtgctgacacttggacagctttgcctgttctgcaacaggcagtattgtctc
agtcatcatatacctgaggttcacggctgtggggataaagccaagtctcatgctcgaatg
agaataagcaaagaaggcgttctttacgccgggagtgggaagaaagacaaatccatggac
cccagtaagaaagcctatctgcaaaggaaactggactctaaactgaaagatatgtcatca
cagaggaaaccaaaaaaagacaaagagaatgaaagttaa
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