Perca flavescens (yellow perch): 114561054
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Entry
114561054 CDS
T07494
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pflv
Perca flavescens (yellow perch)
Pathway
pflv03013
Nucleocytoplasmic transport
pflv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pflv00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
114561054
03015 mRNA surveillance pathway
114561054
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pflv03019
]
114561054
Enzymes [BR:
pflv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
114561054
5.6.2.5 RNA 5'-3' helicase
114561054
Messenger RNA biogenesis [BR:
pflv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
114561054
mRNA cycle factors
Common to processing body (P body) and stress granule
114561054
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
DEAD
nSTAND3
AAA_16
Helicase_RecD
ATPase
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
AAA_5
Motif
Other DBs
NCBI-GeneID:
114561054
NCBI-ProteinID:
XP_028442514
LinkDB
All DBs
Position
9:25246225..25269273
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AA seq
1100 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYDFTDFTLPSQTQTQGQTQSQLDSQVNG
PDEGLHNGGVDDPVAKPSQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITA
QQINKLEELWKDNPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIG
HVIKVPDNYGDEIAIELRSSVGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVS
GYIYHKLLGHEVEDVTIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGK
TVTSATIVYHLSRQGNGPVLVCAPSNIAVDQLTEKIDKTGLKVVRLCAKSREAIESPVSF
LALHNQISNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCV
GAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKA
GLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQ
WPQPDKPMFFYVTQGQEEIASSGTSYLNRTEASNVEKITTRLLKAGAKPDQIGIITPYEG
QRSYLVQYMQFSGSLHTKLYQQVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRR
LNVALTRAKYGVIIVGNPKALSKQPLWNNLLNNYKEQKVLVEGPLNNLRESLMQFSKPRK
LVNTINPGGRFMSNAMYDAREALIPGSAYDRSSAGRPSNMYFQTHDQIGMIGAGPGHMAM
NIPIPFNLVMPPLPPPSYLGQTNGPAAGRGAMKGKPGRGGRQRIRGSAHQGASQGNGPNS
QVSQDGASQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQD
STYQGERAYQHGGVTGLSQF
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccgagctcccagaccctcaccttcctggacaccgaggaa
gcagagttgctcggagcggacacccagggctctgagtacgacttcaccgacttcaccctt
cccagccagacgcaaactcaaggacagacgcagagccagctggacagccaggtaaatggt
cctgatgaaggtcttcacaacggtggagtggatgaccccgtggccaaacccagccagctg
ttggccgagctcaattttgaggaggatgaagaagacacgtactacaccaaagacctgcct
gtgcacgcatgcagctactgtggaatccatgatccagcatgtgtggtgtactgcaatacc
agcaagaagtggttctgtaatgggcgtggcaacacatctggcagtcacattgtgaaccac
ttggtgagagccaaatgcaaagaggtgacgctgcataaagatgggccactgggtgagacg
gtgctcgagtgttacaactgcggctgtcgcaacgtcttcctcttgggcttcatcccggcc
aaggccgattctgtggtggtgctactctgcaggcaaccctgcgccagccagagtagcctg
aaggacatcaactgggacagctcgcagtggcaaccactgatccaggatcgctgctttctg
tcctggctggtgaaaatcccatcggagcaggagcagcttcgggctcgtcagatcaccgcc
cagcagatcaacaagttggaggagctctggaaggacaaccccactgctaccttggaagac
ctggagaaacctggagtggatgaggagccccagcatgtgctgctacgctacgaggatgcc
taccagtaccaaaacatctttggccctttggtcaaactggaggctgactacgacaagaag
cttaaggagtcccagacccaagacaatataacagtcaggtgggacctggggctgaataaa
aagcggattgcctatttcactctgcccaagacggattcaggtgatatgcggctgatgcaa
ggtgacgagatctgcttgcggtacaagggagacctggccccgctgtggaaaggcattggt
catgtcatcaaagtccctgacaactatggggatgaaattgctattgagttgcggagcagt
gttggagcacctgttgaaatcccccataacttccaggtggactttgtttggaagtccacg
tcctttgacaggatgcagagcgccctgaagacgtttgcagtggacgaaacctccgtgtct
ggttacatttaccacaaactgctgggccacgaggtagaggatgtcaccatcaagtgccag
ctgccaaagcgcttcactgcccagggcctgcctgacctcaatcactcacaggtgtatgct
gtgaagacggtactgcagaggcctctcagtctgatccagggtcctcctggcactgggaag
actgtcacctctgccaccatcgtctaccacctgtcccgacaaggcaacggaccagttctg
gtgtgtgctcccagcaacattgccgtggatcagttgactgagaagattgacaagactgga
ctgaaggtcgtcaggctttgtgccaaaagccgtgaggccatcgagtcacccgtgtccttc
ttggctctgcacaaccagatcagcaacatggacagtatgccggagcttcagaaactacag
caactgaaggatgagaccggtgagctgtcgtctgctgatgagaaacgctacagggctttg
aaacgcacagctgagagggagctgctcatgaatgctgacgttatctgttgtacctgcgtc
ggggctggagaccctcgtttggccaagatgcagttccgctccatcctgattgatgagagc
acccaggccacagagccagagtgcatggtgcccgtggtgcttggagccaagcagctcatt
ctggtgggtgatcactgccagctgggtcctgtggtgatgtgtaagaaagcagctaaagca
ggtctgtcccagtccctgtttgaacgcttggtggttctggggatacggccaattcgcctg
caggttcagtaccgcatgcacccagctctcagcgccttcccctccaacatcttctatgag
ggctccctgcagaatggtgtcactgcagctgaccgcatcaagaaaggctttgacttccag
tggccacagccggacaagcccatgttcttctacgtgactcagggtcaggaggaaattgcc
agctctggaacctcctaccttaacaggactgaggcttccaacgtagagaagatcaccacc
aggctgctgaaggctggagccaaacctgaccagatcggcatcatcaccccgtacgaggga
cagcgctcctacctagtccagtacatgcagtttagtggctccctgcacaccaaactctat
cagcaagtggaaatagccagtgtggacgccttccagggcagagagaaggacttcatcatc
ctgtcttgtgttcgtgcaaatgagcaccagggcattggcttcctgaatgacccacgtcgt
ctcaacgtagcgctgaccagagccaagtatggtgtgattatcgtgggaaaccccaaggcg
ctctccaagcagccgctgtggaacaacttgctgaacaactacaaggagcaaaaagtcctt
gtggagggacccctcaacaacctgagggagagcctcatgcagttcagcaagccacgcaaa
ctggtcaacaccatcaaccctgggggacgttttatgagcaatgcgatgtacgatgcccgt
gaggccctcatccctggctccgcctatgaccgcagcagtgccggacgtccgtccaacatg
tactttcaaactcacgaccagattgggatgattggggcaggccccggtcacatggctatg
aatattcccatacccttcaacttggtgatgccaccactgcctccgcccagttacctgggt
cagaccaacggccctgctgcaggtcgtggagctatgaagggtaagcctgggcgtggcggg
cggcagaggatccgtggatcggcacaccagggtgccagtcagggtaacggaccaaacagc
caggtcagccaggatggggcctcccaacccttctcccaggggccgctgacacaaggctac
atctccatgagccagccctctcaaatgagccagcctggcctctcccagccagagctgtcc
caggacagctacctgggcgatgagttcaagtcccaaatcgatgtggctctgtcccaggac
tcgacttaccagggtgaacgtgcataccaacatggtggggtgactggactgtcacaattc
taa
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