Perca flavescens (yellow perch): 114562825
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Entry
114562825 CDS
T07494
Name
(RefSeq) CCR4-NOT transcription complex subunit 6
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
pflv
Perca flavescens (yellow perch)
Pathway
pflv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pflv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114562825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pflv03019
]
114562825
Enzymes [BR:
pflv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
114562825
Messenger RNA biogenesis [BR:
pflv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
114562825
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
114562825
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_8
LRR_4
LRR_14
LRR_1
LRR_LRWD1
LRR_R13L1-DRL21
Motif
Other DBs
NCBI-GeneID:
114562825
NCBI-ProteinID:
XP_028445253
LinkDB
All DBs
Position
10:20668981..20682747
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AA seq
559 aa
AA seq
DB search
MPKEKYDPPDPRRMYTIMSSEEAANGKKSYWAELEISGRVRSLSTALWSLTHLTALHISD
NSLSRIPPDIAKLHNLVYLDLSSNKIRTLPAELGNMVSLRELLLNNNQLRVLPFELGKLF
QLQTLGLKGNPLAQEIMSLYQEPDGTRRLLNYLLDNLAGAIKRIPTEQPPARSWISLQEP
DRTRASALFSVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKSIMQEIMGCNADIISLQE
VETEQYYNFFLPELKEQGYDGFFSPKSRARTMSESDRKHVDGCAVFYRTEKFSAVQKHTV
EFNQLAMANSEGSEAMLNRVMTKDNIGVAVLLEVRKEMMEASSGKSLHGMEKQLLLVANA
HMHWDPEYSDVKLVQTMMFLSEVKNIVDKATRSLKLSSVSGETNAIPLVLCADLNSLPDS
GVVEYLSTGGVDCTHKDFKELRYSDSLTKFNCNGKSSTSNGRITHAFKLKSAYENGLMPY
TNYTFDFKGVIDYIFYSKPHLNVLGILGPLDPHWLVENNVSGCPHPHIPSDHFSLFGQLE
LLLPNLPPQVNGLHLPARR
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaggaaaaatatgacccgccggatcccaggcggatgtatacaattatgtctagc
gaagaagcagccaacgggaagaaatcatactgggccgagctggaaatcagcggccgagta
aggagtctcagcacagccctgtggtctctcacccacctcactgccctgcacatcagtgac
aactcattgtcacgcatcccgccagacattgccaaactacacaacctagtgtacctggat
ctctcatccaataagatcaggaccctgccggcagagctcggcaacatggtgtctctcagg
gaactgcttttaaataacaaccagttgcgggttctgccatttgaattggggaaactgttt
cagttacaaacactggggttgaaaggaaacccacttgcacaagaaattatgagcctctac
caggaacctgatggcacgcggagactgctcaactacttgttagacaatctggcaggggct
atcaagcgcataccaacagagcagcccccagcacggtcgtggatctcactacaggaacca
gaccgaacacgggcctcagcactgttctctgttatgtgctacaatgtgctgtgtgataaa
tacgccacacgacagctatatggctactgcccctcttgggctttaaactgggagtacagg
aagaaatccatcatgcaggagataatgggctgcaatgcagacatcatcagtttgcaggaa
gttgagacagagcagtactacaattttttcttgcctgagctgaaggagcagggatacgac
gggttcttcagtccaaagtcacgagccaggactatgtccgagtcggaccgtaaacatgtg
gacggttgtgcagttttctacaggacggaaaagttcagtgcagtgcagaagcacacagtg
gagttcaaccagctggccatggctaactccgagggctcagaggctatgctgaacagggtg
atgaccaaggacaacattggggtagctgtactgcttgaggttcgcaaagagatgatggag
gcctcatctggaaagtcactccatggcatggagaagcagctgctcctggtagccaatgcc
cacatgcactgggacccagagtactctgatgtcaagctggtccagaccatgatgttcctg
tcagaggtgaagaacatagtggacaaggccacacgcagcctcaagttgtcctctgtctct
ggtgagaccaatgccattccactggtgctgtgtgctgacctcaactccttgcctgactct
ggcgtagtggagtacctgagtactggtggggtggactgcacccacaaagacttcaaggag
cttcgttatagcgacagcctgaccaaattcaactgcaacggcaagagcagcacgtccaac
ggcaggatcacccacgccttcaagctgaagagcgcttacgagaacggcctgatgccttac
accaactacacctttgacttcaagggtgtcatcgactatattttctactctaagcctcac
ctgaacgtgctgggtatcttgggccctctggacccccactggcttgtagagaacaatgtc
agtggctgcccacatccccacatcccctctgaccacttctccctcttcggccagctggag
ctgctcctgcccaacttgcccccacaggtcaatgggctccatctgcctgcacgcaggtag
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