Perca flavescens (yellow perch): 114563803
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Entry
114563803 CDS
T07494
Symbol
col4a2
Name
(RefSeq) collagen alpha-2(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
pflv
Perca flavescens (yellow perch)
Pathway
pflv04382
Cornified envelope formation
pflv04510
Focal adhesion
pflv04512
ECM-receptor interaction
pflv04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pflv00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
114563803 (col4a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
114563803 (col4a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
114563803 (col4a2)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
114563803 (col4a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pflv04147
]
114563803 (col4a2)
00536 Glycosaminoglycan binding proteins [BR:
pflv00536
]
114563803 (col4a2)
Exosome [BR:
pflv04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
114563803 (col4a2)
Glycosaminoglycan binding proteins [BR:
pflv00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
114563803 (col4a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
114563803
NCBI-ProteinID:
XP_028446483
LinkDB
All DBs
Position
11:complement(17586582..17669796)
Genome browser
AA seq
1677 aa
AA seq
DB search
MSGTMQGQHNRALENLRLLLLCLSVAILASGVHAGGKKDSGPCGGRDCSGGCKCFPEKGA
RGLPGPLGPQGSQGPPGRLGDAGIQGPKGQKGDRGRSGIIGPKGNVGMTGVPGFSGNDGI
PGHPGQAGPRGRPGADGCNGTHGESGLMGQPGYNGAPGFPGQPGWKGQKGDSLELTVYME
RFRGDPGTPGPNGRFGPQGNPGQQGHKGFLGPKGPPGPPGPRGPKGTMTKVIKGLKGSQG
DTGPPGLPGNSTHQQIKPPYGPPGPSGEKGLKGNIGDLADNKGETGVMGVPGSRGPSGAD
GRHGPRGDFGEQGPKGRDGPKGVRGDPGELISSGNWPWISGAGPTGPPGEQGPQGERGPV
GNQGFPGPPGRPASETQQQVWDFMGPFGMKGEQGDKGQPGDPGRPADRAGPQGSSGRPGV
RGPPGPKGTWAEFFKGAPGGRGRPGNAGYKGLKGDHGLCECTVVNSPPGLPGPAGDRGDA
GMTGEFGQEGDLGEPGPQGDDGFPGPPGLSGAPGQKGRKGEPSVASQKGYPGDPGDRGQD
GETGVFGASGQNGLPGIPGSRGLPGEGVRGEPGDKGFPGRPGRPGAPGLSGEEGKVLGGV
KGQRGLPGDDGHAGYDGVPGTPGSPGGCSLTGDGGQVDVTGSPCDAVQGPPGLPGPPGPS
GLPGLPGQLGQKGPQGPHGAHGEKGETGDQGIGGRPGPPGFSGPRGDLGVPGSKGSVGAP
GVHGEHGRYGAQGEKGAHGEIFGASPGPPGDTGLPGLQGNKGLTGDPGEQGYPGMAGMPG
MIGSRGERGPLGLQGEEGRPGPAGKYGYPGDPGRAGPPGPRGGTGQPGLPGERGTEGDPG
PPGPIGLKGNPGTYGNDGAFGEHGPSGEMGKPGADGRPGLPGMKGYKGSSGMSGFKGTRG
NIGVKGFSGFSGEPGLPGQVGLKGVKGRSGEKGDRGLRGAPGDKPHIPAQMIVDMKGTKG
DPGRYGNQGFTGPRGVKGLPGVPGTDGTHGPPGNPGNKKGNHGDPGAEGLQGMKGMPGLT
GNRGITGFDGMPGNRGIKGSPGAYGATGDKGRKGVKGDTGPRIDLPGTTGLRGEHGLPGE
PGQKGLIGQPGDRGAPGFGGIDGRKGESGDPGISGYPGSDGQKGTPGNQGQKGFPGTPGK
DGHPGFPGFPGNKGFPGLKGLYGLHGLKGTKGIPGTPGLDTIGPAGESGIKGEKGESGDP
NSQPGAPGTAGLKGFQGPLGDHGQPGPPGLRGPVGPNGTPDRPGPSGDPGYKGPKGYQGF
PGAKGFPGLDAPPGEKGVPGVHGFPGFPGRKGFKGDQGSFGYRGPNGVYGKKGMKGDQGV
MGVPGVTGVKGERGPSGPKGNTGPTGIHGIPGDQGPLPIPIRIPGERGPPGPHGIQGPKG
VKGETGPQGPPGDTGFMGPIGQKGMPGIGGRSGTPGFRGELGQMGHPGLQGMEGHRGNPG
IRGLPGMPGRSVSVGYLLVKHSQSEQTPMCPVGMSKLWDGYSLLYFEGQEKAHNQDLGLA
GSCLPRFNSMPFLYCNPGDICYYASRNDKSYWLSTTAPLPMMPVEEGEIKPYISRCSVCE
APSVAIAIHSQDITIPQCPAGWRSLWIGYSFLMHTAAGNEGGGQSLSSPGSCLEDFRTTP
FIECNGAKGTCHYFANKHSFWLTSIDQSFHTEPASETLKAGQLLSRISRCQVCMKNL
NT seq
5034 nt
NT seq
+upstream
nt +downstream
nt
atgagcgggaccatgcaaggacaacacaacagagcactggagaacctgaggctgctgctt
ctgtgcctctccgttgccatcctcgcctcaggagtgcacgcgggtgggaagaaggacagt
ggcccgtgtggaggaagagactgcagcggaggctgtaaatgtttcccagaaaaaggtgcc
aggggtctccctggtcctctaggtcctcagggctcccaggggcctccagggagactaggt
gatgcaggcatccaaggaccaaaggggcagaagggtgaccgcggccgtagtggcatcata
ggtcctaaaggaaatgtgggaatgaccggcgttcctgggttttctggaaatgatggcatt
cctggccatccaggacaagctgggccaaggggcaggccaggtgcagacggctgcaatggg
acacacggagaatcagggttaatggggcaacccggctataatggcgcacctggttttcct
ggtcagccaggctggaagggacagaagggagactctctggagctcactgtgtacatggag
cgcttcaggggagatccaggcacaccagggcccaacggaagatttgggcctcaaggaaac
ccaggacagcagggtcataaaggcttcctaggtccaaagggtcccccagggcctccaggt
ccccgtggaccaaagggcactatgaccaaagtgattaagggactcaaaggaagccaaggg
gacaccggaccaccagggctgccaggaaactctactcatcagcaaattaagcccccctac
ggccccccgggaccttctggtgagaaaggtttgaaaggaaacataggagatttggctgac
aacaaaggtgaaactggtgtgatgggagtccctggatcacggggtccatctggtgcagat
gggcgtcatggaccaaggggggattttggtgaacaaggaccaaaaggcagagatggtcct
aagggagtcagaggtgacccgggagaactgatttcatcaggaaactggccctggatttca
ggagctggtcctactggtcctcctggtgagcagggtccacagggagagagaggcccggtt
ggaaaccaaggcttccccggacccccaggacgccccgcctctgaaacgcagcaacaagtt
tgggatttcatggggccatttgggatgaagggagagcaaggagataagggccaaccaggg
gatccaggacgtcctgctgacagggcaggaccccaaggctctagcgggcgcccgggggtc
aggggacctccaggacctaaaggaacatgggctgagttcttcaagggggctcctggtggg
agaggaaggcctggcaatgcaggctataaaggactgaaaggtgatcatgggttgtgtgaa
tgcaccgttgtaaactctccaccggggctacctggccctgccggtgaccgcggtgatgct
gggatgaccggagagtttggtcaggagggtgatttaggagaaccaggtccccaaggagat
gacggattccctggacctcctgggctcagcggtgcgccgggccaaaaaggtcggaaaggc
gaaccgagtgtggcctcgcagaaaggatatcctggagacccaggggatcgcgggcaagat
ggtgagacgggagtgtttggtgcttcgggccaaaatggattgcctggtatccctgggagc
cgaggtcttccaggagaaggtgtcagaggagaacctggagacaaaggtttcccaggtcgg
cctggtcgacccggtgcacccgggctaagtggagaagaaggtaaagtccttgggggagtc
aagggtcaacgtggtttacccggtgacgatggccacgcgggctatgatggagttccagga
acacctggcagcccaggcggctgtagtctgacaggagatggaggacaggtggatgtaaca
ggtagtccttgtgatgctgttcaaggacctccagggctgcctggacctccaggacccagt
ggattaccaggtctcccaggtcagctgggccaaaaaggaccacagggcccacatggagca
catggagagaaaggagaaacaggagatcaaggcataggtggccgtcctggaccaccaggt
ttttctggcccccgtggagacttgggggttcctggcagcaaaggatcagtaggagcccct
ggtgtgcacggtgagcacggtcggtacggggcacaaggtgagaagggtgctcacggagag
atctttggagcatcaccaggaccccctggagacacagggctgcctgggcttcaagggaat
aaaggcctgaccggtgatccaggagagcaaggctatccaggaatggccggcatgcctggt
atgattggctccaggggtgagaggggccctctgggcctacagggggaggaagggaggcct
gggccagcgggcaagtacggctaccctggtgatcctgggcgagcaggtccacctgggcca
cgtggtggtaccggacagccaggtttacccggagagaggggaactgaaggagaccctgga
cctccaggtccaattggattaaaaggcaacccagggacctacggtaatgatggtgccttt
ggagagcatggtccatcaggtgaaatgggaaagcctggtgcagatggacgcccaggactt
ccaggaatgaagggatacaaagggtcttcaggcatgtcagggtttaagggtaccaggggc
aatataggggtgaagggcttcagcgggttcagtggggaacctggattgccgggccaagtt
ggcttaaaaggagtgaagggtcgaagtggagagaaaggtgatcgtggtttgagaggggca
cccggagacaagcctcacatccccgcccagatgattgttgacatgaagggaaccaaggga
gacccggggcgttatggaaatcaaggtttcaccgggccgagaggtgttaagggtttgccc
ggtgtgccaggcaccgatggaacccatggtcctcccggaaacccgggcaataagaaaggt
aaccatggagatccaggagcagaggggctgcaggggatgaaaggaatgcctggccttact
ggaaatcgaggaattacgggttttgatggaatgccaggcaacaggggaattaaaggaagt
cctggtgcctacggcgcaacaggagacaaaggaaggaagggagtcaaaggtgacacagga
ccgcgcatcgaccttccaggaaccactggattgagaggagagcatggtcttcctggagag
ccaggccagaaaggattgattggacaaccaggggacaggggagcacctggttttggtgga
atcgatggaagaaagggagagtcaggtgatccaggaatatcagggtacccaggctctgat
gggcagaagggaactcctggtaaccaaggtcagaaaggctttcctggaacgcctggaaaa
gatggacatccgggttttcctggcttcccaggaaacaaagggttccccggcctgaagggt
ctttatggattacatggactgaaaggaacaaagggtatccctggaacaccaggtctggat
accattggaccagctggagaatcaggaatcaaaggagagaagggagagagtggtgacccc
aacagccaaccaggtgctcctggcacagcgggtttaaaaggcttccagggacctctaggt
gaccatggtcaacctggacccccaggattacgcggccccgtcggaccgaacgggacccca
gatagaccaggacccagtggggaccctggttataaaggacctaaagggtaccaaggtttc
cctggagccaaaggatttcctggtctggatgctccccctggagaaaaaggtgtaccagga
gtacatgggtttcctggattccctggaaggaaaggatttaaaggagatcaaggttccttt
ggatacagggggccaaatggggtctatggaaagaaaggaatgaaaggagaccaaggagtg
atgggagttcctggtgttactggtgtgaagggagaaagagggccatcaggtccaaaagga
aacactggaccaacaggcattcatgggatcccaggagaccagggtcctcttccaattccc
atcagaattccaggagagagaggccctccaggtccgcatggtatccaaggaccaaaaggg
gtcaaaggggaaacagggccacagggcccccctggggatacagggttcatgggacccatt
gggcagaagggcatgccggggattggtggtagatcaggaacgcctggattccgtggagag
cttggacaaatgggtcaccccggtctgcaaggcatggaaggtcaccgtggaaaccctggt
atccgcgggttacctggtatgccgggccgcagcgtcagcgtgggttacttgctggtgaaa
cacagtcaatcagagcagacgcccatgtgtcctgtgggcatgtcgaaactgtgggacggc
tacagtctgctgtactttgagggccaggaaaaggcccacaaccaggatcttggtttggct
ggctcctgcctcccacggttcaacagcatgcccttcctgtattgcaatcctggagacatt
tgttactatgccagcagaaatgataagtcctactggctgtcgacgactgctcctcttccc
atgatgcctgtagaagagggagagatcaaaccgtatatcagccgctgctcagtatgcgaa
gctccatcagttgccatcgcaatccacagccaggacatcaccatcccacagtgtcctgcg
ggctggcgcagcctgtggatcggctactccttcctcatgcacacagcagcaggaaatgaa
ggcggaggtcagtccttgtcgtcacctggctcctgcctggaggacttccgcacaacacca
ttcattgagtgtaacggggccaaaggcacatgccactactttgctaacaagcacagcttc
tggctaacctccatagatcagtcgttccacactgagccggcatcagagacgctcaaagca
ggccagctcctgtcacgcatcagccgctgccaagtctgcatgaagaacttgtga
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integrated database retrieval system
