Perca flavescens (yellow perch): 114564167
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Entry
114564167 CDS
T07494
Symbol
ddx3x
Name
(RefSeq) ATP-dependent RNA helicase DDX3X isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
pflv
Perca flavescens (yellow perch)
Pathway
pflv04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
pflv00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
114564167 (ddx3x)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pflv03019
]
114564167 (ddx3x)
03041 Spliceosome [BR:
pflv03041
]
114564167 (ddx3x)
03036 Chromosome and associated proteins [BR:
pflv03036
]
114564167 (ddx3x)
Enzymes [BR:
pflv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
114564167 (ddx3x)
Messenger RNA biogenesis [BR:
pflv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
114564167 (ddx3x)
mRNA cycle factors
Common to processing body (P body) and stress granule
114564167 (ddx3x)
Spliceosome [BR:
pflv03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
114564167 (ddx3x)
Chromosome and associated proteins [BR:
pflv03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
114564167 (ddx3x)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-GeneID:
114564167
NCBI-ProteinID:
XP_028447178
LinkDB
All DBs
Position
11:6677949..6697449
Genome browser
AA seq
742 aa
AA seq
DB search
MSHVVIDNPHGLDQQLAALDLNSADGQGGGTGRRYIPPHLRNKDAPKNAGNAYSAGRQYG
YSVAPVNLYSPGWDGGRSNGFVNGYHDNRTNGGFGGRGPPRNDRGGRGAYRGNRGGGSFN
QPLQNAGFSGGEGNWGGAPRDAAYNSFGGRNDQRSKSTFFNERGAGSRGRYERGGFSSGG
NNRWSDESREEDWSKLSAPNERLENELFSASNTGINFEKYDDIPVDATGNNCPPHIESFH
DVDMGEIVMANIGLSRYDCPTPVQKHAIPIIKSKRDLMACAQTGSGKTAAFLLPVLSQIY
QEGPGDALQAAKSSGQDNGRYGRRKQYPIALVLAPTRELALQIYDEARKFAYRSRLRPCV
VYGGADIGQQIRELERGCHLLVATPGRLVDMMERGKIGLDYCNFLILDEADRMLDMGFEP
QIRRIVEQDTMPPKGIRQTMMFSATFPKEIQILARDFLEDYIFLAVGRVGSTSENITQKV
VWVEDGDKRSFLLDLLNATVIPSEVQENVTEAPEKPGKESLTLVFVETKKGADALEDFLY
HEGYACTSIHGDRSQRDREEALHQFRSGRCPILVATAVAARGLDISNVKHVINFDLPSDI
EEYVHRIGRTGRVGNLGLATSFFNDKNSNITKDLLDILVEAKQEVPSWLESLAYEHQHKS
TTRGRSKRFSGGFGARDYRQTPGGSANSFSSNRGGGGGGRSAGGHGGGNRGFGGGSFGGN
FYGNDGYGGNYSHSGSVDWWGN
NT seq
2229 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtggtcattgataatccacacggtctagatcagcagcttgctgccctagac
ttgaactctgctgacggacaaggcggaggaactggcaggcgttacattccacctcacttg
agaaacaaagatgcaccaaaaaacgcaggaaatgcttattccgctggtagacagtacggt
tattcagtggcaccagtaaatctctattcacctggatgggacggtggacgcagcaatgga
tttgtgaatgggtaccacgacaaccgcacaaatgggggctttggagggcgaggaccccct
cgcaatgatagaggtgggcgtggcgcctaccgtggtaacaggggtggaggctcgtttaat
caaccattacaaaatgcagggtttagtggtggtgaaggcaactggggaggagctcctagg
gatgctgcctacaacagctttggcggacgcaacgatcaaaggtccaagtccaccttcttc
aatgaacgtggagcaggctcaaggggaagatatgagcgtgggggcttttctagtggagga
aacaaccgctggtcagatgaatctagagaggaggattggtccaagctctccgctcccaat
gagcgcctggaaaacgagcttttctctgcaagcaacactgggataaactttgagaaatat
gatgatattcccgtggatgccactggaaacaactgcccgccacacattgaaagcttccat
gatgtggacatgggggagattgttatggcgaacatcggcctcagtcgctacgattgtccc
actccggtccagaagcatgctatccccatcatcaagtccaagagagacctgatggcctgc
gcccagactggctccggtaagactgcggctttcttgctgccagtgctgagtcagatctac
caagaggggccaggagatgctctgcaggctgccaagagctctggacaggacaacggaagg
tatggccgccgtaagcagtacccaatcgctcttgtcctggctcccaccagagagctggct
ctgcagatctacgatgaggccagaaagtttgcctatcgctcacgtctgcgtccctgcgtg
gtgtatggcggtgcggatattggtcagcagatcagggagttggagagaggctgtcacctg
ttggttgccacacctgggcgtctggttgacatgatggagaggggaaagatcggtctggac
tattgcaacttcttgatcctggatgaggctgaccgcatgttggacatgggttttgagcca
cagatcagacgcattgtggagcaggatacaatgccgcctaaaggcatccgtcagaccatg
atgttcagtgccactttccccaaggagatccagatcctggctcgggacttcctggaggac
tacattttcctggcagtgggcagagttggatccacttcagaaaacatcacccagaaggtg
gtctgggtggaggatggcgacaagaggtccttcctccttgacctgctcaatgccacagtt
attcccagtgaggttcaggaaaatgtgacagaggcaccagagaaaccgggcaaagaatcg
ttgactctggtgtttgtggaaaccaagaaaggcgccgatgctctggaagacttcctttac
cacgagggttacgcctgcaccagcatccacggagatcgctcccagagagaccgagaggaa
gctctgcatcagttccggtcaggacgctgccccatcttggtggctacagctgtggctgcc
agaggtctggacatcagcaatgtgaagcacgtcattaactttgatttgcccagtgacatt
gaggaatacgttcaccgtattggccgtacgggacgtgtgggcaaccttggtctggccacg
tcgttctttaacgacaaaaacagcaacataaccaaagatttgctggacattttggtggag
gccaagcaggaggttccctcctggcttgaaagcctggcctacgagcaccagcacaagagc
accacccgtggacgctctaagaggttctctggcggattcggagctagagactaccgtcag
acccctggtggctctgcaaacagcttcagtagcaaccgtggtggtggtggaggtgggcgt
agcgctggaggccatggaggaggaaaccgtggcttcggtggaggaagctttggtggtaac
ttctacggcaacgacggctacggaggaaattacagccactctgggagtgtggattggtgg
ggcaactag
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