Perca flavescens (yellow perch): 114564400
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Entry
114564400 CDS
T07494
Symbol
col18a1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
pflv
Perca flavescens (yellow perch)
Brite
KEGG Orthology (KO) [BR:
pflv00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pflv04147
]
114564400 (col18a1)
00535 Proteoglycans [BR:
pflv00535
]
114564400 (col18a1)
00536 Glycosaminoglycan binding proteins [BR:
pflv00536
]
114564400 (col18a1)
Exosome [BR:
pflv04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
114564400 (col18a1)
Proteoglycans [BR:
pflv00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
114564400 (col18a1)
Glycosaminoglycan binding proteins [BR:
pflv00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
114564400 (col18a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
DUF1554
DAG1
Motif
Other DBs
NCBI-GeneID:
114564400
NCBI-ProteinID:
XP_028447523
LinkDB
All DBs
Position
11:30884190..30986557
Genome browser
AA seq
1455 aa
AA seq
DB search
MRTQFGVLFLFTLCVVYSDAWFWAWTGTTTLPPTVDHEGSGSPAGSGEPPSENIARVGAE
IIDEEHGMQKVVQTWDETTEGPRLTTLLPTTQPENKRASEKGTTGISSRILKSDQSGVSL
LQLIGDPPPNMISQVFGPDNSPGYVFGPNANTGQLARAHLPSPFFRDFALIFNLKPTSDR
GGVIFSVTDSAQQIMYVGVKLSAVQGSNQNVILYYTEPDSQQSYEAASFRVPSMRDTWTR
FAIAVRDDKVMFYLNCDTDPQVMRLERSPDEMELEAGAGVFVGQAGGADPEKFLGVMGEL
RVVGDPRAAERHCEEDEDDSDVASGEGSGYEETRPPKPAVEKHRWTTTTPSSRPIQQPPL
TRVDVSVARETASDSQHIFVESGPGLPGSPGPVGAKGEKGDRGDTGAKGDRGPIGPKGDA
GSGSGSGSRGGARGDKGEPGEKGSKGSAGFGYQGKKGEPGLSGPPGPPGPPGPATEFSVG
GDGSVASRVPGPRGPAGPQGAAGPQGPAGADGEPGDPGEDGKPGPDGPPGFPGTPGEPGA
KGDKGERGEGQPGPRGPPGPPGPPGPGLRSTFVDMEGSGFPDLESVRGLPGLPGPPGPPG
PPGPSTVGAGTASSSGAFGPPGKDGAPGQPGLPGLPGTDGLPGVSGPKGEKGDTGELGLP
GAVGEKGSKGNPGLPGTPGEPGLAGLPGPLGPVGPPGPPGPPGPSYRVGFDDMEGSGGGF
SNGLPGVRGPEGRPGSPGLPGLPGKAGLPGITGQKGSEGPVGKDGRPGLDGFPGPQGPKG
SSGIKGERGDPGRDGTGIQGPPGPPGPPGQVVYQTSGNVDGIVGNAGPQGGPGLPGQAGF
PGPIGPKGDRGDAGLPGYGAKGEKGEPGLIIGPDGNLLYLEGLTGTKGDRGSPGPVGPAG
PYGPPGIKGEIGMPGRPGRPGVNGYKGEKGESGVGSGYGYPGVPGQPGPPGPPGPPGPAI
PLDRINRYDEISRNYPATKGEKGEQGDRGLPGTASNFDIYTFKNELKGERGDSGVKGEKG
EPGGGYYDPRFGGVQGPPGPPGKPGLHGPKGESIMGPPGPQGPPGSPGIGYDGRPGPPGP
PGPPGSPSLPGGYRPNYSVSVPGPPGPPGAPGIPGHSSGVTVLRSYDTMVATARRQAEGS
LIYIIDKADLYLRVRDGLRQVMLGEYSPFFRDLENEVAEVQPPPVILHPQSQDQSQNNGA
GHYSQGGHAIRPIEPPPQPPVDPRYPPQYDPRFPDPRNTGQTDGRPATQQTENRYPVTPQ
RRPSPPVPQPAGHADPLVSGLHLIALNAPQTGNMRGIRGADFLCFQQARAIGLKGTFRAF
LSSKLQDLYTIVRRSDRDSVPIVNLKDQVLFSSWESLFGDYSNKMRENVPIYSFDGRDTL
RDSAWPEKMVWHGSSNKGHRQMDHYCETWRAGDAAVTGLASSLQSRHLLQQTSSSCSGSH
IVLCIENAVTTHFKK
NT seq
4368 nt
NT seq
+upstream
nt +downstream
nt
atgaggacccagtttggagtattgtttttgttcaccctgtgcgtggtctactctgatgct
tggttctgggcctggactggtactacaactttgcccccaacagtggaccatgaggggtct
ggcagtccagcaggtagtggagaaccaccatcagagaatattgcaagggttggagcggag
atcattgatgaggaacatgggatgcaaaaggttgtgcagacttgggatgagaccactgag
ggacctcgcctgaccactctattacctacaacacaaccagagaacaaacgtgcatcagaa
aagggaacaacagggatttcatcacgcatacttaaatctgaccagagtggagtctccctg
ctacagctgattggggatcctcctcctaatatgatcagccaggttttcgggcccgacaac
agccctggctatgtctttggccccaatgccaacacaggccagctggcccgtgcccacctg
cccagccccttcttccgagattttgccctcatcttcaatctgaaacccacctctgacagg
ggcggcgtcatcttctccgtcaccgactccgcacagcagatcatgtacgtgggcgttaaa
ctgtcggccgtgcagggcagcaaccagaacgtcatcctgtactacacggagcccgactcc
cagcagtcgtacgaggcggccagcttccgtgtgccctccatgagggatacctggacccgt
tttgccatcgctgtgagggacgacaaggtgatgttctacctcaactgtgacacagaccct
caggtgatgcgccttgagaggtccccggacgagatggagctggaggccggcgctggggtc
tttgtcggccaagctggaggagccgaccctgagaagtttctgggggtgatgggtgagctg
agggtggtgggagacccccgtgctgctgagaggcactgtgaagaggatgaagatgactcg
gatgtggcttcaggtgaaggaagtggctatgaggaaaccagacccccaaaaccagccgtg
gagaagcacagatggacgacgactactccgtcttcccggcccattcagcagcctccactg
accagggtagacgtgtcagtagcaagagaaacagcaagtgactcccagcacatttttgtg
gagtccgggcccggacttcctgggtcaccagggccagtgggggctaaaggagagaagggt
gaccgaggggatacaggagcgaaaggagaccggggtccaatagggccgaagggagatgct
ggctcaggctccggctccggctcacggggtggagcccgtggagacaagggagaaccaggg
gaaaagggatcaaagggcagtgcaggctttggctaccaaggaaagaagggagagcctggc
ctctctgggcctcccggcccccctggccctccagggcccgcaaccgagttttcagtcggc
ggtgacggctcggtcgcttccagagtcccgggaccccgaggaccagctggaccgcaaggt
gccgcgggcccccagggaccagcaggagctgatggagagccaggcgatccaggggaggat
ggaaaacccggtccggatggacctcctggcttccctggaaccccgggggaacctggagct
aaaggagataagggagagcgtggagagggtcagccgggccccagaggccccccaggacca
ccgggacccccaggaccaggactcagatctacttttgtggacatggaaggctcagggttt
cctgatctggaatctgttcggggactgcctggtctaccaggtccccctggtccccccggt
cctcccggtccctctacggtaggagcaggaacagcatccagttctggggcatttggacca
ccagggaaggacggagcgcccggtcaacctggcttgcctggtttgccgggtactgatggc
ctcccgggagtgtctggtccaaagggagaaaagggtgatacaggcgagctgggtcttcca
ggagcagttggagagaagggatctaaaggaaatcccggtttaccgggaactccaggagag
cccggactggctggtctgcctggacccctcggaccggttgggccacctgggcctcccggg
cctcctggaccaagctatcgggttggatttgatgacatggagggctctggtggaggtttc
agcaatggactgcctggcgtcagaggacctgaaggaagaccgggttctcctggcttgcct
ggacttccgggtaaagctgggttgcctggtatcacaggtcagaagggcagcgaaggtcct
gtaggaaaagatggccgaccagggctggatggcttccccggacctcagggaccaaagggt
agcagtggcatcaaaggagagaggggtgacccaggtcgggatggaactggaatccaaggt
ccacccggcccacctggaccacctggacaagttgtctaccagacatctggcaatgttgat
ggtattgttggcaatgctgggcctcagggaggacctggtttacctggtcaagctggattc
cctggtcctattggaccaaagggtgaccgaggagacgccggcctcccgggctacggagcg
aagggtgagaaaggtgaaccgggcttaataatcggaccggatggaaatcttctctacctg
gaagggctgacgggtacgaagggagacagaggatctccaggacctgttggccccgctgga
ccgtatgggcctcctggaataaaaggtgaaattggaatgcccggaagacctggtcgcccc
ggtgtaaatgggtacaagggtgagaaaggagagtcgggagttggatctggctacggctac
ccaggagtccctggccaaccaggaccaccgggaccaccgggaccacccgggccagccatt
cccttagatcgcatcaaccgctacgatgaaatttcaaggaactacccagcgactaaaggg
gaaaaaggagagcagggtgaccgaggacttccaggaacagcctctaattttgatatttac
acattcaagaatgaactgaagggagagcgtggagactcaggtgtgaagggagaaaaggga
gagcccggtggtggatattatgacccacgttttggaggagtacaaggcccaccagggcct
cctggcaaaccaggcctacatggcccaaagggagaatccataatgggccctcctggaccc
caggggcctccggggtcaccagggattggttacgatgggcgtccaggtcctcccggacca
cccggacctccaggatctccctcactcccagggggatataggcccaattactccgtcagt
gttcccggacctcccggtcctcctggtgcacctggaatacccggtcactcctctggggtt
actgttttgaggtcctacgacacgatggtagctacagccagacggcaggcggaaggcagc
ctcatctacatcatagacaaagctgacctgtatttgagagtacgcgatggactgcgccaa
gtcatgcttggagagtacagtccattcttcagagatctggagaacgaggtggcagaggtg
cagcctccccctgtgattctgcacccccagtcccaggaccagtcccagaacaacggagcc
ggccattactcccagggcggtcacgccatacgacccatcgagcctccgccgcagccaccc
gtagaccccaggtaccccccgcagtacgatcccagattcccggatcccagaaacacgggt
cagacggacggaagaccggccacccaacagaccgagaacagataccctgtaactccgcag
cgacgacccagcccacctgtaccgcagcccgctggccacgcggacccattggtatcagga
ctacatctcatcgccttgaacgcccctcaaactggtaacatgcgaggaattcgcggggcg
gacttcctgtgcttccagcaggcccgcgccataggcctgaaaggaaccttcagagcattc
ctgtcctccaagcttcaagacctctacaccatcgtccgcaggtcggacagggacagtgtc
cccatcgtcaacctcaaggaccaagtgttgttcagcagttgggagtctctcttcggcgac
tattcaaacaaaatgagggagaatgtgccaatctactccttcgatggtagagacaccctc
agggacagcgcatggccagagaaaatggtgtggcacggctcgagcaacaaaggccaccgg
caaatggaccactactgcgaaacgtggcgggcgggtgacgccgctgtgaccggtctggca
tcatcgctacagagcaggcacctcctgcagcaaacgtccagcagctgctcgggctcccac
atcgtcctctgcatcgagaacgccgtcacgacacacttcaaaaaataa
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integrated database retrieval system
