Perca flavescens (yellow perch): 114564421
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Entry
114564421 CDS
T07494
Symbol
upf3a
Name
(RefSeq) regulator of nonsense transcripts 3A
KO
K14328
regulator of nonsense transcripts 3
Organism
pflv
Perca flavescens (yellow perch)
Pathway
pflv03013
Nucleocytoplasmic transport
pflv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pflv00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
114564421 (upf3a)
03015 mRNA surveillance pathway
114564421 (upf3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pflv03019
]
114564421 (upf3a)
Messenger RNA biogenesis [BR:
pflv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
114564421 (upf3a)
mRNA cycle factors
P-body specific factors
114564421 (upf3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
114564421
NCBI-ProteinID:
XP_028447553
LinkDB
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Position
11:complement(14468994..14474137)
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AA seq
465 aa
AA seq
DB search
MRWREMRSEKDQMTVGKEKSVVEIQFRDIPREQENIPGNFKPKEEKKEVFTKVVIRRLPP
NLSKDQLEEQLSPLPSYDYFEFFPADQSLSPHLFSRAYINFKNNEDILLFRDRFDGYVFI
DNKGQEYPAVVEFAPFQKISKKKLKKKDAKSGSIEEDPEYKRFLENYSCDEEKSMANPET
LLGEIEAKTRELIAKRTTPLLEYIKNKKIEKQRIREEKREERRRRELEKKRQREDEKRKR
REEERRKRKEADKQKKLSDKDIKIKLLKKSDRDDDVDSDRMKDKSDIGETDRGKWEKAGG
QTKSKDPKEKSLPESEKEQREQHGRRQRDKDHRGKDEERKRQRHHYEFDKFMRRKDETKW
GKGYCQDRAKKEGHHHGYSYCPDIGDKLGKEDREDLGNRKERLRNKDRPAMQLYQPGARN
RKRMSSAGKGYDCIPSPESGTEHCYEAVTMATGLEKGFEKSKDEQ
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atgagatggagagaaatgaggtctgaaaaggaccaaatgaccgtgggcaaggagaaaagc
gtcgttgagatacaatttagagacatcccgagagaacaggaaaacatccctggcaacttc
aagccgaaagaagagaagaaagaggtttttactaaggtggtgattcgaaggcttccacct
aacctgtcaaaagaccagctagaggaacagctcagtccgcttccatcctatgactatttt
gagttctttcccgctgatcaaagtctttctccccatttgttctccagagcatatatcaat
tttaaaaacaatgaagatatccttctgttcagggaccgatttgatggctacgtcttcatt
gacaacaagggccaagaatatcctgcagtggtggagtttgctcccttccagaaaatctca
aagaagaagttaaaaaagaaagatgccaaatccgggagcattgaagaagacccagagtat
aagcggttcttggagaattactcctgtgatgaagagaagtcaatggccaaccctgagact
ctgctaggagagatagaggccaagaccagagagcttatagccaaacggacaacaccactg
ttggagtacattaaaaataagaaaattgagaaacagagaataagagaggagaagagagaa
gagaggagaagaagagagcttgaaaagaaacggcaaagggaggatgagaagagaaagcga
cgagaggaggagagacgcaaacgaaaagaggcagataagcagaagaaattgtctgataaa
gacattaaaattaagctcctgaagaagagtgacagggacgatgacgtggactcagaccga
atgaaggacaaaagtgacatcggggagacagacagaggcaaatgggagaaagctggagga
caaacaaagtcgaaggaccccaaagaaaaaagtctgcctgaaagtgaaaaggagcagaga
gagcagcacggtcgcagacaaagagataaggatcaccgtgggaaagatgaagagaggaaa
cgacagcgacaccattatgagtttgacaagtttatgcgccgcaaagatgagaccaaatgg
gggaaaggctactgccaggacagagccaagaaagaggggcaccatcatggctattcttac
tgtcctgacattggagacaaactaggaaaggaggacagggaggacctgggtaacaggaag
gaacgcctccgaaacaaggaccgtccagccatgcagctctatcagccaggcgcacgcaac
aggaagcgcatgagctcagcaggcaaaggctatgactgcatcccctcacctgaatccggg
accgagcattgctatgaggctgtcactatggcgacggggctggagaaggggttcgagaaa
agcaaagatgaacagtga
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