Perca flavescens (yellow perch): 114564810
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Entry
114564810 CDS
T07494
Name
(RefSeq) collagen alpha-4(IV) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
pflv
Perca flavescens (yellow perch)
Pathway
pflv04382
Cornified envelope formation
pflv04510
Focal adhesion
pflv04512
ECM-receptor interaction
pflv04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pflv00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
114564810
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
114564810
09142 Cell motility
04820 Cytoskeleton in muscle cells
114564810
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
114564810
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pflv04147
]
114564810
00536 Glycosaminoglycan binding proteins [BR:
pflv00536
]
114564810
Exosome [BR:
pflv04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
114564810
Glycosaminoglycan binding proteins [BR:
pflv00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
114564810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
114564810
NCBI-ProteinID:
XP_028448193
LinkDB
All DBs
Position
12:3761425..3788481
Genome browser
AA seq
1673 aa
AA seq
DB search
MGSSVTVVTLCPLRWILFLVIFVQQLNAGRNEGPCQGRDCSVCQCFPAKGARGAPGKPGQ
QGPRGQMGPWGREGPPGEKGRMGAEGSHGPEGPKGDRGKTGVPGFSGNDGSPGHPGAGGE
PGLPGVDGCNGARGRPGVFGIDGSDGLHGPQGLRGLKGIKGEPLYGATYPGLPGERGADG
QRGRPGRKGDIGPKGHTGPPGPLGLEGLEGPKGVRGLPGDPGGSLTGPKGDDGEQGEPGP
QGPEEVIQVPPHIIQPKGDKGDQGLPGPCGPKGMSGGRGDVFVQGIKGEQGIPGFPGVRG
SPGFRGRDGPPGPEGLPGEKGFPGLIGRTGPKGYPGDPGLPGPLHFQNGSNARGVKGDRG
DAGLSGPAGDPGYMGVPGPPGPPGLTIPEEPGLPGTQGSPGPKGYKGEPGSYDYFENLFP
GTKGSKGIVGPKGVTGLPGPPGCGDYYCEPGDPGDPGDKGSKGHRGNQGFKGIKGCQGDC
NCRPGDGNKGPPGPPGYPGSPGLPGTQGLKGDPGLKGSDGPRGPQGFEGIPGLKGHKGQK
GRSFVEDVKGAKGNQGDPGPSGPPGLTGTLGPNGRPGLAGDPGPPGAGYAGLPGPKGDPG
VAGPKGLSGPIGLPGPGYPGAKGPPGLNGHQGLPGSLGIPGRRGPRGETEPCCHDDEIGL
PGRKGEPGSPGISGKPGRDGPPGSPGQQGPKGMKGDGSETGVIGLPGPPGFNGDPGEPGP
RGVSLDGPPGLPGLQGHPGRKGAPGDVTSARPSATGPPGRPGARGTKGRHGLPGNPGSPG
ADGQYGQPGWKGEPGANGDPGATGPPGPPCTVCDLIGLTGPPGPPGNPGHRGVPGYPGQK
GLKGDRGPPGHGERGPQGFPGPPGFPGPVGPTGPTGLSGDPGSDGLPGLKGERGFPGRPG
AKGLPGRPGPPGLRGKEGERGFNGRPGDTGYPGLSGIKGERGPPGTRGPISCENVTRGPP
GAPGEMGPPGLPGTEGSKGARGEPGASGPNGLPGSLGFKGSTGASGRPGLPGPPGYPGNK
GFPGPMGYPGHDGDWGDPGPLGESGIPGLPGLPGAKGEQGESYGQHGPPGPKGLPGEDGP
SASRGSPGDPGDPGPPGRSGQPGESGIVGEPGSQGEPGYPGPLGPSGQPGLPGLPGDQGG
PGPPGSPGPYGPPGPPGAPGLDGLDGLRGPKGIKGASGIGSPGPPGPDGFPGAKGYKGQQ
GPPGPIYPGPKGQRGPPGVKGRPGYPGDPGNPGRECYRPLPGLCGYVGYEGPPGPPGRPG
EPGSPGSSIVSKGDPGPIGFPGAPGSKGDQGFPGPAGSHGYPGLGGSKGERGPDGSGGFP
GPKGQTGVPGPRGRKGVTGQPGDPGVKGAPGDSIWEDPKRAPMGLPGPRGRPGSVGFPGD
SGPPGTPGRKGQKGPIGNVGIPGKPGPAGPNGHIGDPGDVGQLGFTGPQGIPGPPGETGL
PGHRGALKSGFLLVIHSQSVVVPRCPEDSSHLWVGYSLVYLQGQEKAHIQDLGQAGSCLP
VFSSMPFSYCNTAACHYSSRNDKSYWLSTTAPIPMMPLSGQEISSHISRCVVCETVSPAV
AFHSQDPTVPACPPGWRSLWTGYSFLMQTGAGDEGGGQSLASSGSCLKNFRTHPFIECQG
ARSSCHYFANLYSFWLTTVGQTEQFITQRPGTIKAANLQRQKASQCHVCRREQ
NT seq
5022 nt
NT seq
+upstream
nt +downstream
nt
atgggatcctcagttactgttgtaactctgtgccccctcaggtggatccttttcctggtc
atctttgtgcagcagctcaatgcagggaggaatgagggcccatgtcaaggcagagactgc
tctgtatgtcagtgttttcctgctaaaggtgcacggggagctccagggaagccaggccag
caaggcccccggggacaaatgggaccatggggacgtgaagggccacctggagagaaaggc
aggatgggagcagaaggatcacatggcccagaggggcccaaaggagaccgtggcaagact
ggtgttcctggtttttctggtaatgatggctcaccaggccaccctggagcaggcggcgag
cctggtttgccaggagtggatggctgcaatggggcaaggggtcgaccaggcgtttttggt
attgatggttcagatggtctccatgggccacagggattacgtggacttaaaggaattaaa
ggagaacctttgtatggtgctacatatccagggcttccgggggagcgtggtgcggatgga
caacgtggtcgacctggaagaaaaggcgacattgggcctaaaggccacactggccctcct
ggccctcttggacttgagggcttggaaggacctaaaggtgtgagaggactaccaggtgac
cccggaggatcactgacaggacctaaaggtgacgatggtgagcaaggtgaacctggccca
caaggaccagaagaagtcatacaagtccctccacatataatccagcccaaaggtgacaag
ggagaccagggtcttcctggaccatgtggaccaaagggcatgagcggaggtaggggagat
gtcttcgtccaaggaattaaaggagagcaaggaatccctggttttcctggagttaggggt
tctccagggtttcgtggtagagatggaccaccaggacctgagggtctgccgggagagaaa
ggatttccaggtctcattggaagaacgggaccaaagggttacccaggagatccaggttta
cccggtcccctacactttcaaaatggaagtaatgccagaggtgttaaaggtgaccgtggg
gatgccggactgtctggacccgcaggtgaccctgggtacatgggtgtgcctggcccacct
ggcccaccagggttaacaataccagaagagcctggtctgcctgggacacaagggtctccc
ggtcccaagggttacaagggcgaaccgggaagctatgactattttgaaaatctgtttccg
ggaacaaagggatctaaaggaattgtcggacctaaaggtgtcacaggcctccctggtcca
ccaggatgtggagattactactgtgagcctggagacccaggggaccctggtgacaaagga
agcaaaggacatcgtggaaaccaagggttcaaagggattaaaggttgtcaaggggattgt
aactgtagacctggtgatggaaacaaagggccccctggtccacctggttatccaggatct
cctgggttacctggaactcaaggacttaaaggagacccaggactgaaaggaagtgatggt
ccaagaggcccacaaggctttgaaggaattccgggtttaaaaggtcacaagggtcaaaaa
ggtcgcagttttgtggaagatgttaaaggtgccaagggcaaccaaggagaccctggacct
tctggtcctcctggattaactggtacactaggaccgaatggacgccctggccttgcaggg
gaccctggaccaccgggtgctggatatgcaggattacctggtcccaaaggtgaccctggt
gttgctggacccaaagggttatcagggcctataggcctcccaggtcctggctatccaggc
gctaaagggccacctggacttaatggtcatcagggacttcctggctccttaggaattcct
ggacgacgaggccctcgaggtgaaactgagccatgctgtcatgatgatgagattggatta
cctggtcgtaagggtgagccaggttcaccggggatttcaggcaagccaggaagagatggt
cctccaggaagtccgggacagcaaggcccgaaaggcatgaaaggagacggcagtgaaact
ggagtgattggactgccaggacctccaggttttaatggggatccaggtgagcctggtccc
aggggagtcagcctggatggcccaccaggccttcctgggttacaaggacacccaggcagg
aagggtgccccaggagatgtcacctctgccaggccaagtgctactggcccacctggtcgc
cctggggctcgggggacaaaaggacgccatggccttcctggaaatccaggttctccaggt
gcagatggccaatatggacaacctggttggaaaggagagccaggagccaacggtgaccct
ggggccactggtcccccaggcccaccctgcactgtctgtgacctgattggactcacaggc
cctccaggccctccaggaaaccccggacacaggggagtaccaggctaccctggtcaaaag
ggtcttaagggagatagaggtccacctggtcatggagagaggggtccacaaggtttccct
ggccctcccgggtttccaggcccagttggaccaacaggcccaacaggcctctcaggagat
cctggctccgatggcttgcctggactgaaaggtgaaagggggttcccaggcaggcctggg
gccaaaggtttaccaggtcgtcctggacctccaggactgagaggaaaagagggagagaga
ggctttaatggtcgcccaggtgacactggatacccaggactgtctggtattaaaggtgaa
cgtggtccaccaggaacaagaggaccaatatcgtgcgagaatgtaacaagaggcccacca
ggagctccaggagagatgggtccaccaggactaccaggaactgaaggctcaaagggcgca
aggggagagccaggtgcttcaggtcctaatggattgcctggttctctagggtttaaaggc
agcactggtgcttcaggcaggcccggattaccaggacctcctgggtaccctggaaacaaa
ggtttccctggtcccatgggatatcctggacatgatggagattggggagatccagggcct
ttgggagaatcgggtatcccagggttaccgggacttccaggagccaagggtgagcaagga
gagtcttatggacaacatggtccacctggacccaaaggactgccaggggaggatggaccc
agtgcatccagagggagtccaggagatccaggggacccaggacccccgggaaggtcaggt
cagcctggagaatcaggcattgtcggggaaccaggaagtcaaggagaaccaggctaccct
gggcctctgggcccatcaggtcagccaggtcttccaggtcttccaggcgatcaaggaggt
ccgggaccaccaggctcccctggtccatatgggcctccagggccccctggagcaccaggt
ctggatggactggatgggcttagaggtccaaaagggatcaaaggagcaagtggtataggt
agtcctggccctccaggaccagatggttttcctggagccaaaggttataaaggccagcaa
gggcctccaggacccatttatcctgggcccaaaggccagaggggcccacctggcgtcaaa
ggtcgtccaggctacccaggtgaccctggtaaccctggcagagaatgctacaggcctttg
ccaggactctgtggatatgtaggatatgaaggacctccaggacctccaggtcgtcctgga
gagccaggctctccaggcagcagcattgtctccaaaggagacccaggtccaattggcttc
cctggggcaccaggttctaagggggatcagggcttcccagggcctgctggctctcatggc
tacccaggcttaggaggatcaaaaggtgagagaggtcctgatggttccggaggttttcca
ggacccaaaggacagactggggtccctggacctcgggggcgcaagggagtaactggccaa
cctggagacccaggtgtcaaaggtgctcctggggattccatctgggaagacccaaaaagg
gcccccatgggactccctggaccacgtggtcgcccaggatctgtggggtttcctggcgat
tccggtcctcctgggactccaggacgtaaaggacagaagggtcccatagggaatgtgggt
atccctggcaaaccaggtcctgctggtcctaatggtcatattggagacccaggagatgtt
ggtcagctgggatttactggacctcaaggtatcccaggtccacccggtgaaacaggtttg
ccaggccataggggggcgttaaagtccggcttccttttggttatccacagccagtcagtt
gtggtgccacggtgccctgaagatagcagtcacctttgggtgggctacagtctggtctac
ttgcagggacaagagaaagctcacattcaagatctgggccaggctggctcctgcctccct
gtattctcctccatgcctttctcctactgcaacaccgctgcctgtcactactctagccgt
aacgacaaatcctattggctctccaccaccgctcccatacccatgatgccgctttctggc
caggagattagctcccacatcagccgctgtgtggtgtgtgagacagtctcacccgcagtg
gcttttcacagccaggatcccacagtccctgcatgcccacctggctggaggagtctgtgg
acggggtactctttcctcatgcaaacaggggcaggtgatgagggtggtggccagtctctg
gcttcttctggtagctgccttaagaatttccgaactcaccccttcatagagtgccagggt
gcgcgcagttcctgtcactactttgccaacctctacagtttttggctgactactgttggt
cagacagagcagtttatcacccagaggcctggcaccatcaaggcagccaacctacagcga
cagaaggccagccagtgccatgtctgccgcagagaacaataa
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