Perca flavescens (yellow perch): 114564813
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Entry
114564813 CDS
T07494
Symbol
rc3h1
Name
(RefSeq) roquin-1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
pflv
Perca flavescens (yellow perch)
Brite
KEGG Orthology (KO) [BR:
pflv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pflv03000
]
114564813 (rc3h1)
04121 Ubiquitin system [BR:
pflv04121
]
114564813 (rc3h1)
Transcription factors [BR:
pflv03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
114564813 (rc3h1)
Ubiquitin system [BR:
pflv04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
114564813 (rc3h1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
zf-C3HC4_3
zf-C3HC4
zf-CCCH
zf-C3HC4_2
zf-CCCH_4
Prok-RING_4
zf-CCCH_UNK
zf_CCCH_4
FYVE
NS3_helicase_C
Baculo_IE-1
RING_XB3-XBAT31
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
114564813
NCBI-ProteinID:
XP_028448197
LinkDB
All DBs
Position
12:3636758..3657305
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AA seq
1133 aa
AA seq
DB search
MPVQAPQWTEFLLCPICTQTFEETVRRPISLGCGHTVCKMCLNKLHRKACPFDQTAISTD
IEQLPVNTALLQLVGGQVPKAQPVALITSPEDSQHYEEARQCVEELALYLKPLSNTRGVG
LSSTAQSMLSRPMQRKLVTLVHCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEGGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLEKGLVAVKTVVHGLVDFIQNHSKKGADPQQPPQHSKYKTYMCR
DMKQKGGCPRGASCTFAHSQEELEKYRKMNKRLAARLPGSGGLMPDEGLPLDVAVTRKPS
PLTNGSGGHSLPQLIARGTDTVPYELLRKPMKMDGGSPSAPGSPPDGMDPGLPKPGMPLP
PHAMAHQRMSVDHLTGVKHMPVVARGSPVYTQPPHPEMCYDTRPPPSASQYDPPQYPTGY
PYQQPPQYVPRDYMRNPPPPSESGPPYQDPYPGYGPPERPYQAPHSGPPFSYPHPQHHDR
GRHGTYTGPPPPPQPYPSQRDGLVRMSPAPLDMPPPSAGQANSLYHQESSARDRYPPDGY
YTQNAQPPPMRAYGRGPSYSGSHPSLDYLHRRRQELLSQLEERKVISPPPFAASPVSHPF
PSDYPPEYGEESSKNMVKCREPDYAGQYSPWSCETIGSYIGTKDAKPKDVMVPGTMDMMN
AEAKGLREPSLEAPRRGAEVKDDDPIIPFGPQPTVSRFGAISRTSKMGYQTTGPVQAMAS
TPHNPSAKHMAMSEYTYGSHGGWGGASYPSHQPASSSQGHFSERLPMAAPDREQLKIELQ
QVNQQINQQTQMRSMEAASNSLLLQREASALAGQPGQPSQGQVSVAQQQAKWPAGGASTT
AVSSEQLSMELHQVEREIGKRTREMALENQVAHDVQQYKMKTAENGQPEHKTQLEEISLA
LGEVSNGSSSLQESAVGGSMLSLTNKTSAMSLCSDQGATGSEIQKNGVVHSCS
NT seq
3402 nt
NT seq
+upstream
nt +downstream
nt
atgccagtgcaagcaccacaatggacagagttcctgctgtgccccatctgcacgcagaca
tttgaggagactgttcgccggcccatcagcttgggctgtggacatactgtctgcaagatg
tgcctgaacaagttgcaccgtaaggcctgtccctttgaccagacagccatcagcacagac
atcgagcagctacctgtcaacacagccctgttgcagctggtgggaggccaggttcctaag
gctcagccagttgccttgattaccagtccagaggactcgcagcattatgaggaggcccgg
cagtgtgtggaggagctggccctctacctcaaacctctcagcaacaccagaggtgtgggc
ctgagcagcacggcccagagcatgctgagtcgacccatgcagaggaaactggtaactctg
gtccactgccagctggttgaggaggagggtcgcgttagagccatgagagctgcccgctct
ctgggtgagcgaaccgtcaccgaactcatcttgcagcaccagaatccacagcagctctcc
tccaatctgtgggccgctgtgcgtgcacgcggatgtcagtttcttggcccagccatgcag
gaggaagctctaaagttggttcttcttgctctagaggatggctctgctctgtccaggaag
gtgttggttctctttgtggtccagagacttgagccacgcttcccgcaggcttctaagact
agcataggccatgtggtgcagctcctctacagggcctcctgcttcaaggtgaccaaacgt
gatgaagattcatccctgatgcagctgaaagaggagttccgtacttacgaggctctgcgg
cgcgagcatgactctcagatagttcagattgccatggagggtgggctgcgcatcgcacct
gaccagtggtcttctctgttatatggagatcaatctcacaagtcacacatgcagtctatc
atagataagctgcagaccccggcgtctttcgctcagagtgtccaggagctgacaattgcc
ctgcagaggaccggagacccagccaacctcaacaggctgcggccccacctggaactactg
gccaacattgatcccagtcctgatgctccccctcccacatgggagcagcttgagaaaggg
ttggtagcagtgaaaacagtggtgcatggcctggtggacttcatccagaaccacagcaag
aaaggagctgaccctcaacagcctcctcagcacagcaagtataagacatacatgtgtcgt
gacatgaagcagaagggaggctgtcctcgaggagccagctgcacctttgctcattctcag
gaagaactggagaagtatcgtaaaatgaataagcgtctggcagcgcgcctccctggctca
ggagggctcatgccagatgagggccttcctctcgatgtagcagtcacccggaagccttca
cccctcaccaacggtagtggtggacactctttgccccagctcattgcccgtggcaccgac
acagtcccatatgaattgttgcgtaaacccatgaagatggatggagggagtcccagtgcc
ccaggatcaccacctgatggcatggaccctgggctacccaaacctggtatgcctctgcca
cctcatgccatggcccaccaaaggatgtcagtggaccacctcactggggtgaagcacatg
cctgtggtagccagaggttcaccagtgtatacccagccaccgcaccctgagatgtgctat
gacacccgcccaccaccttctgcttctcagtatgaccccccacaataccccacagggtac
ccctaccaacagccaccacagtatgtcccccgggattacatgcgtaaccctcctcccccc
agtgagtcaggacccccttaccaggacccctaccctggctacgggcctccagagcgccct
taccaggcccctcactctggtccacctttctcttaccctcatcctcaacaccatgaccga
ggtcgccacgggacctacactggcccaccacctcccccacagccttacccatctcagagg
gatggcctggtcagaatgagtcccgcacctctggatatgcccccaccatcagcaggacag
gctaactccctttatcaccaggagtccagtgcccgtgatagataccctccagatggttac
tatacacagaatgcccagcctccacccatgagggcttatggcagggggccatcatatagt
ggttcacatcccagcctggactacctgcaccgacgtcggcaggagctgttatctcagctg
gaggaaaggaaggttatctcccctccaccattcgctgcctcccccgtttcccatcccttc
cccagcgactaccctccagagtatggcgaggagagctccaaaaacatggtgaaatgcaga
gagcctgactatgcagggcagtactctccctggtcttgtgaaaccattggctcctacatt
ggcacaaaggatgccaaacccaaagacgttatggttcctggtaccatggacatgatgaat
gcggaggctaagggtctgagggaaccatcgctggaggctcctcggaggggtgcagaagtc
aaagacgatgaccctattatcccatttggcccccagcccactgtgtcacgctttggtgcc
atctcccgcacctcaaagatgggctaccagaccacaggccctgtgcaggctatggcctcc
acgccccacaacccaagcgctaaacatatggccatgtcagaatacacatatgggagccat
ggaggatggggtggagcttcatacccctcccaccagcctgcctcctcctctcagggacat
ttcagtgagcgccttcctatggcagccccagacagagaacagttgaagattgagctgcaa
caggtcaaccagcagatcaaccaacagacccaaatgcgaagcatggaggctgccagtaac
tctttactgctgcagagggaggccagtgcattggcaggccagcctgggcagcccagccaa
ggccaggtgtcagtagcgcagcagcaggccaagtggccagcagggggagcaagtacaaca
gcagtctccagtgaacagctaagcatggagctccaccaggtggagagagaaattggcaag
aggacccgtgagatggctttggaaaaccaagtagcccatgatgttcagcagtacaaaatg
aaaacagcagagaatggacaaccagagcacaaaactcagctggaagaaatctccctggct
cttggtgaggtgtcaaatggctccagcagtctgcaagaaagtgcagtgggcgggtccatg
ctgtcactgaccaataagacgtctgcaatgagcctgtgctctgatcaaggtgccactggg
tcagagattcagaagaatggcgtcgtccattcctgctcttag
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