Perca flavescens (yellow perch): 114564987
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Entry
114564987 CDS
T07494
Symbol
pdcd11
Name
(RefSeq) protein RRP5 homolog isoform X1
KO
K14792
rRNA biogenesis protein RRP5
Organism
pflv
Perca flavescens (yellow perch)
Brite
KEGG Orthology (KO) [BR:
pflv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pflv03009
]
114564987 (pdcd11)
Ribosome biogenesis [BR:
pflv03009
]
Eukaryotic type
90S particles
Other 90S particles
114564987 (pdcd11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1_RRP5
S1
Spt6_S1
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
Suf
TPR_14
OB_RRP5_4th
TPR_19
HAT_Syf1_CNRKL1_C
OB_RRP5
UTP6_C
TPR_CcmH_CycH
TPR_16
ARM_TT21_5th
DUF2110
TPR_15
ARM_TT21
PPR
Wzy_C_2
ANAPC3
Motif
Other DBs
NCBI-GeneID:
114564987
NCBI-ProteinID:
XP_028448552
LinkDB
All DBs
Position
2:complement(13975137..13992646)
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AA seq
1815 aa
AA seq
DB search
MASVEEDFPRGGTAKKPTESKIVVQRTEVDNLFQSNEKAETKKRKGAVKDDGKKLKKPKT
GKGDGLTLNAAAKCVEILHIKNVKEGILMLGCVKEVTDFEVTVSLPCGMQGFLSIKNICD
SYTKLLSEQLESADTEEICSLPHIFYPGMVFRCVVAKLDVAKGGSLSIQLSINPKLINKA
LTSTSLKAGMVLSGCVESVEDHGYIVDIGINGTKAFLHKKAVKDKHNSEDLTVGQYVTSQ
VEEVKNDGRVVRLSVSPPAVAQACAESEQGWNLTNLLPGLLVKATIKKVTKHGLILDFLS
SFSGQVDFLHMEPGQTSSYTEGAQVRACVLYVEPSTRLVGLSLRSYLLQPGTRVDPSPAG
GDRIGEVVQNCKMTTMHHMSGAMLELPDKTLAFVHRNHLKESNEPANENRVLAMTEHTCR
ILDFSAMDQIHFASLRKSVIDKRFYRYHDLQAGQIVEGTVSVLLNHGMVVHLSDHIKGLV
PRTHLSDILLKNPEKKYIEGMKIKCRVLSVDAENKKLYLTRKKALVESSLPLFLSYTDAR
PGRVSHGYIVCIKDFGCIVRFYNNVKGLVPLSELSSEPVLSPEEFFYVGQVFKAKVLQCD
PDKAKMLLSFKAAAEGDTEEAATAQFDCEVGKRLEAKVLKKSVNGLEVAILPDEVRAVLP
TMHLSDHLSNCTLLWESLQEGDVISNVMCFNKNKLNITLTKKPTVRWSLEEGVVAKDFSE
ITVGMQLIGWIKNIMSYGVFVEFPYGLVGLAPKSAMTDKFISDTITVFQPGQTVLAKVTN
LDEEKRRFLVTLKMSEVISPEGDVQTRLINGLQERKAVAEMLAVRENSDLRQQLAALSIG
QKLKLTVDTAKDCAATFKSDDLAGATILAAKHHVMGVNLTPGQKATAVILRVDILSTCVH
VSLLPKLMAKKKSLAEGSKYTAMVQHIDRDFAVVSLEDTAQLTVIQTSSHLNETFLSESE
KLKAGMSLAVEVIEPSCQELQGLSLVSWQRTAPNRQRTTSENQTSSKGYCFGEIVRGKVR
TVKPTSLQVTLEDGSTGSVHVSEVVEVADVCQGSFPTASVKVGSEVTARVIGGREASSHR
YLPFSHPKFTYTIPELTLVPSKLDKCPVLKAVTVKEKINRYKVGEEVTCFVSKFNPVRKI
LEVTTDPCVTGTVELLAMITDPKEASHPEKLYKLGQAVHAKVVEVISKPQRFMLSLTGVH
KLEKNSVALGIVTNIQPQVGLLVKLPFGGMGTVDVTDLADAYRPNPLDGYSKDKLLRFFL
FGEEKGKWQLSLRPSRLNPQQAKPAKDPEVLSVDQLKAGQIIRGYVKSVGEQGVFIRLSR
SITGRAQLQQSTKYFVSHHKVLSEHLTPNTLLTTKILSIDIEEELVHLSLLPEDTGKPDV
LPESLGLPLRLIGEEKKEHDTKKKMKRAVSESEQKQEESQVPKKKKKKTKKAKTDDSDSG
VEVYFREEEDKEAEEEPTSNSVKQVTHSSAGPCRLQVAAGFSWDVGLSSLKPASAAQEGD
SSDGEDQDGSSKPQKKSRHELEQEKKAAEKALVQRETELMDPSLRPQDAAAFERLLLASP
NSSLLWLQYMAHHLQATQIEQARAVAERAIKTISFREEQEKLNVWVALLNLENMYGTEES
LKKVFERALQFCEPMPVYQQLADIYAKSDKTKEAEGLYKTMVKRFRQNKAVWLSYGTFLL
QQGQSDTASALLQRALKSLPSKESVDVIAKFAQLEFRYGDSEKGRTIFDKVLTSYPKRTD
LWSVFIDLMVKHGSQKEVRALFDRVIHLSVSVKKIKFFFKRYLEYEKKHGTPQSIQAVKE
KAMEFVEAKGTEAAN
NT seq
5448 nt
NT seq
+upstream
nt +downstream
nt
atggcatcagtggaggaggacttccctcgaggaggaacagcaaagaagcccacagagagt
aaaatagtggttcagcggactgaagtggacaacttgttccagtcgaacgaaaaagcagaa
accaagaaaaggaagggggcggtcaaagatgacggaaagaagctcaagaagccaaagacg
ggcaaaggagatggtctgacgctaaatgcagcagccaagtgtgtggaaattctacacatc
aagaatgtgaaggagggtatcctgatgctgggctgtgtgaaggaggtgactgactttgag
gtgacagtcagcctgccctgtggcatgcaaggctttctcagcatcaagaacatctgtgac
tcgtacaccaagctcctcagcgaacaactggagtcagctgatacagaggagatctgctct
ctgccacacatattctaccctggcatggtgttcaggtgtgtggttgccaagttagatgta
gccaaaggaggctctcttagcatccagctgtcaatcaatccaaagctgatcaacaaggct
ctcacatcaacctctctgaaagctggcatggtcttgagcggatgtgtggagagtgtggag
gatcatggctacatagtggacattggcatcaatggaaccaaagccttcctgcacaagaaa
gcagtgaaagataaacacaactcagaagatctgactgtgggtcagtatgtgacttctcaa
gtggaggaagtaaagaacgatggacgtgtggtccgcctttctgtcagccccccggccgtc
gcccaggcttgtgctgaatccgagcagggctggaacctcactaacctgctgcctgggctt
ctggtcaaagctacgatcaaaaaggtgaccaaacacggcctgatcctggacttcctgtcc
tccttcagtggccaggtggactttctccacatggagccagggcagacatcaagctacacc
gagggagctcaggtgcgggcctgtgtgctgtatgtggagccgtccacccgtctggtgggc
ctgagcctgcgcagctacctccttcagcccgggaccagagttgacccgtctcctgctgga
ggtgaccgcattggtgaggtggtgcagaactgcaagatgaccactatgcaccacatgtct
ggagccatgttggaactgccagacaaaactttggcctttgtacataggaaccacctgaag
gagtctaatgagccagccaatgaaaacagagtgctggccatgactgagcacacctgcagg
atcctggacttcagcgccatggaccaaattcattttgcttctctgcgaaagagtgtgatt
gacaagcgtttttatagatatcatgatcttcaggccggacagattgtagaggggacagtg
tccgttctgctgaatcacggcatggtggtgcatctgtccgaccacatcaaaggcctggtg
ccccggacacacctgtctgatatcctccttaagaatccagagaagaagtacatagagggc
atgaagatcaaatgtcgggtgctgtcagtcgacgcagagaataagaagctgtatctgacc
aggaagaaggccctggtcgaaagctctctgccattgttcctcagctataccgatgcccgt
cctggccgcgtctcccacggctacattgtctgcatcaaagactttggctgcatcgttcgt
ttctacaacaacgtcaagggtctggtgccgctcagcgagctcagctcggagcccgtcctc
agtcctgaggagttcttctatgtggggcaggtatttaaggctaaggttcttcagtgtgac
cccgacaaggcgaagatgttgctgtcatttaaggccgcggcggaaggagacactgaggaa
gctgccacggcccagtttgactgtgaggtggggaagaggctggaggccaaggtgctgaaa
aagtcagtcaacggtctggaggtggccatcctccctgatgaggtccgagccgtactaccc
acgatgcacctttccgatcacctctccaactgcactctgctgtgggagagcctgcaggag
ggagacgtcatctcaaacgtcatgtgcttcaacaagaacaaactgaatattaccctcacc
aagaaaccaacagtgagatggtccctggaggaaggagtggttgccaaggacttctctgaa
atcacagttggaatgcagctgattggctggatcaagaacatcatgtcttatggcgtcttt
gtggagttcccatacgggcttgttggtcttgcacccaagtcggccatgaccgacaagttc
atcagcgatacgataaccgtcttccagccgggccagacggtgctcgcaaaagtgaccaac
ctggatgaggaaaagcggcgtttcctggtcacgctgaagatgtcggaggtcatatctcca
gagggtgatgtccagaccagactcatcaatggtctgcaggagagaaaagctgtggctgaa
atgttagctgtgagagagaacagtgatctccgccagcagctggccgctctgtccattggt
cagaagctgaagctgactgtagatactgcgaaggactgcgctgccacctttaagtcggat
gatttggccggtgctaccatactagccgccaagcaccatgtcatgggtgttaatttgacc
ccaggacagaaagctactgcggtcatcctccgtgttgacatcctgtcgacatgtgtccat
gtgtccctccttcccaagctgatggcgaagaagaaatctttagctgaaggatcaaagtac
acggcgatggtgcagcacatcgaccgagactttgctgtcgtctcgctggaagacacggca
cagctgaccgtgatccaaaccagcagccacctgaatgagacgttcctgtccgagtcagag
aagctgaaggcggggatgagtttggccgtcgaggttatagagcccagctgtcaggaactg
caggggctctccctagtgtcgtggcagcgcaccgcaccaaaccgacagcgcaccacctcg
gaaaatcagacgagctctaagggttactgcttcggtgaaatcgtgcggggtaaagtacgg
accgtgaagcccacctcccttcaggtcacactagaggatggaagcaccggcagcgtgcac
gtgtctgaggtggtggaggttgcagatgtgtgtcagggatctttccccactgcctctgta
aaagtgggcagtgaggtcaccgccagggtcatcggagggcgagaagcctccagtcacaga
tacttgcccttctcccatcccaaatttacatacaccattcctgagctcacactcgtaccc
agcaaacttgataagtgtccagttctcaaagcagttacagtaaaagagaaaataaaccgc
tataaggtcggggaagaagtgacatgctttgtatcaaagtttaatccagtgaggaagatt
ttggaggtcaccactgatccttgtgttactgggacagttgaacttctggccatgatcacc
gatccaaaagaggccagccacccagagaaactatacaagctgggccaggcagtccatgcc
aaagtggtagaagtgatctccaaaccgcaacgctttatgctgtcactcacaggtgtccat
aaactggagaaaaacagtgtagctttggggatagtgactaatattcagccacaagttggc
ctcctggtcaaacttccctttggcggcatgggaactgttgatgtgactgacctggctgat
gcctacaggccaaaccccctggatgggtacagcaaggataagctgctcaggtttttcctt
tttggggaagaaaaaggcaagtggcagttgtccctacgcccatcaaggctgaacccacag
caggccaagccagcgaaggacccagaagttttgtctgtagaccaactgaaggcaggccag
atcatcagaggctacgtcaagtctgtgggagagcagggggtcttcatcaggttgtcaaga
agcatcacaggaagagcccaacttcagcagtccaccaagtactttgttagccaccacaaa
gtcctctctgagcacctgactcccaacaccctgctcactaccaagatcctcagtattgac
atagaggaggagttggtccacctctcgctgctcccagaggacaccgggaagccagacgtc
cttccagagtctctcggtctgccgctgcgtctgatcggagaggagaagaaggaacatgac
actaagaagaagatgaaacgtgcagtgtctgagagcgagcagaaacaagaagagtcccag
gtccccaagaagaagaagaagaaaaccaagaaagcaaagactgacgacagtgacagcgga
gtggaggtgtacttcagagaagaagaagacaaggaagctgaagaagaacccacatctaat
tctgtaaaacaggtgacgcacagctcagcgggtccatgcaggctgcaggtggcagcaggt
ttctcctgggacgtgggactgagctccctgaagcctgcctctgcagcgcaggagggggac
tccagtgatggagaggaccaagatggaagcagcaagccccagaaaaagtctcgtcatgaa
cttgagcaagagaaaaaggcggcagagaaggccctggtacagcgtgagaccgagctgatg
gatccgagcctgcgaccccaggacgcagccgccttcgagcgcctgctcctcgcttcaccc
aacagctcgctgctttggctccagtacatggctcaccatctacaggccacccagatcgag
caggcccgcgctgtggccgagagggccatcaagaccatctcctttagggaagagcaagag
aagctgaatgtgtgggtggccctgctgaacctggagaacatgtacggcacagaggagagc
ctgaagaaagtgtttgagcgggcgctgcagttctgcgagcccatgcccgtgtaccagcag
ctggctgacatctacgcaaagtccgacaaaaccaaggaggcggagggcctgtataagacg
atggtaaagcgtttccgtcagaacaaggcagtgtggctgagctatgggaccttcctgctc
cagcagggtcagagtgacactgccagtgctctcctgcagagggcgctcaagagtctgcct
tccaaagaaagtgtggatgtgatcgccaagttcgctcagctggagttccgttatggtgat
tcagagaaaggtcgcaccatttttgacaaagtcctgacgagctacccgaaacgcacagac
ctctggtccgtctttatcgaccttatggtcaaacatggatcgcagaaggaagttagggcg
ctctttgatcgcgtgatccacctgagtgtttcagtaaaaaagatcaagttcttcttcaaa
cgttacttggagtacgagaagaagcacggcactccgcagagcatccaggcagtcaaggag
aaggccatggaatttgtggaagctaaaggcacagaggctgccaactaa
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