Perca flavescens (yellow perch): 114566550
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Entry
114566550 CDS
T07494
Symbol
pcf11
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
pflv
Perca flavescens (yellow perch)
Pathway
pflv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pflv00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
114566550 (pcf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pflv03021
]
114566550 (pcf11)
03019 Messenger RNA biogenesis [BR:
pflv03019
]
114566550 (pcf11)
Transcription machinery [BR:
pflv03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
114566550 (pcf11)
Messenger RNA biogenesis [BR:
pflv03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
114566550 (pcf11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
Ribosomal_60s
Motif
Other DBs
NCBI-GeneID:
114566550
NCBI-ProteinID:
XP_028450894
LinkDB
All DBs
Position
13:33221679..33264095
Genome browser
AA seq
1690 aa
AA seq
DB search
MDCLLINGYGIHKAGVGFAGSMSSKMDDKAAREDACREYQSSLEDLTFNSKPHINMLTIL
AEENLNFAKDIVAIIEAQISKAPSAEKLPVLYLVDSIVKNVGGEYLAVFAKNLITSFICV
FEKVDENTRKSLFKLRSTWDDVFPLKKLYALDARVNSVDPAWPIKPLPPTVNASIHVNPK
FLKQSEEAPSPQPAAAQPAPTPPPAPAPAPQPVPAVSPSSLSQEQLIRQQLLAKQKQLLE
LQQKKIELELEQTKAQLAGGFVIPTTVSAAAAALSAAAPKTTSQTAPVVRPWVPPQTQPS
DVKPPTRDPRLNRAGPPAASQPKDQPAGKKEGSHAPTPEKPARQEKLRTPKKEASEEKPK
SKPPSPMAKSTQSKNKPAEAEIQKSSDGTKKDPRLKKRPQDKTPYKTGDSKDEETKEKRR
CLDKKEREEREESAARGLDPHRLTKGKLANGAVAKHDESAERLEFKTGGNARTHARKRTR
SRSRSRSPSAAAASSSPKRKDRRSPKSRTRSSSLSPSPSHKQPGKPRRVDPEHPGKPGRE
DRLAPKKNPSESRRSKRPAEDRRSESRDSHSPRSHDGGAKEAKEAPHRWRSGWEENKHPK
LPEDSHVKPAPPRHKPYGTPTRPTTPRTPKHRLSVDANLQIPEVLNSASKKDLLRRASKR
LESGEISQEDFLNMAHQIKHFFQYQEEKQRSDSWDDSADYPAKKLLASPPPSSAVPRPHD
AMDAAQLSYYEHKSKLRKTQVNRARAAGEEWDGEESSEDGEGEGTGEKTGGARSAGLPPT
HKYSQAVRDRQGERRSKEHEEPRPPLGPMIEEYNHGKEFPTLKSLPGLRFRRRADPREPK
RSEVRFWSCGVSGSRSVTLQQGEREWTSPLTERQRFAEREVQKSGYDAPRRYGPPGDPRR
PEVPPPPPPPLLAGTGVHMTSPSPAGLEAPAPRIERERLSPLHQKELAELAELSPRFESP
NSEHSDDGPLSLDPHAPPNHPLPPPKSILKPRGGPLAPVRQHSDSPGHTPPHDGAGHPPP
PPPPQQQQRYDGPGHMGPSRPSPQGGWYESSRYDDSPRFEGPPHHHQGPRRFNNGRVVVV
VVGGGGGGSGPPHHNMPERFDGPHMSHALPHGPMGRFDGPPHPQGPVRFEGPIGGGQQQP
PVRFEGPGHFDGPMQRFEGPRRFDTNMAPGPGSGPMGFQQQQQRPMRFDGPPNQMGPMRF
EGPGQQGGPRFDLPSVHHQGGPPLYEQGPMRFPPQHNLQQPMRPMAPPMYENPLPPQQNF
SMGGGPQCFPEPMNAQFPPAGPMAFPAQPNMQPGGSFNMQPGPAPFSQAGPAPFSQAGPA
PFYNPTAPPTVSMQQPVNMLGNLNQPFLPQNPVPFGQQTLQVAPPENHFGQVDVNDLLSK
LISNGIIKPSQPDVVPTATTEPTSAPAAAPPPVEEEEEEAELEEEDDFPDLTSFNVDDMK
LRYESVVTRLYSGNQCCLCSMRFTATQTDLYADHLDWHFRQNHAGKVASKKITHRRWYYG
LTDWIEFEEIADLEERAKSHFFEKENEEEVQKSQAAAKEKEFQSVKATKDQVGELCEICQ
EAFETYWVEEEEDWFLKNALRVDDKNFHPACFEDYKNTFLDSTPSPNKALTDHPLGAFVV
KREEEEEEEEGGDATSSCAVAAAAAIAALANATTATATVKQEAESEPPADVKTEETEVLM
DKEQSGEKRE
NT seq
5073 nt
NT seq
+upstream
nt +downstream
nt
atggactgcctgctaatcaatggttatggtattcacaaggctggtgtaggtttcgccggg
tcaatgagctcaaagatggacgacaaagcggcgagagaagatgcctgcagagagtatcag
tcctcgctggaagacctgacattcaacagcaagccgcacatcaacatgctgaccattctg
gccgaggaaaacctcaacttcgccaaggatatcgtcgcaattattgaagcgcaaataagc
aaggccccatctgccgagaagcttccagttttgtacttagtggattccatagtgaagaat
gttggaggagagtaccttgcagtgtttgctaaaaacctaatcacttcatttatatgtgtc
tttgaaaaggtggatgaaaacactagaaagagtctgttcaagttacggtcgacgtgggac
gatgtgtttcctctgaagaagctgtacgcgctggacgcccgggtcaactcggtggacccg
gcgtggcccatcaagccgctgccgcccacagtcaacgccagcattcatgtcaacccaaag
tttttaaagcagtcggaggaggcgccctctccgcagcccgccgcggcccagccggcgccg
acgcctcctcccgctccggccccggccccgcagccggtccccgccgtcagcccgtccagc
ctgagccaggaacagctgatccgacagcagctgctggccaaacagaaacaacttctggag
cttcagcagaagaagatcgagctggagctggagcagaccaaagctcagctggccggtgga
tttgtgataccgactacggtctctgccgccgcggcagcgctgagcgccgccgcgccgaag
accaccagccaaaccgccccggtggtgcgcccgtgggtccctcctcagactcagccgtcc
gacgtcaaacctcccaccagagacccgcgcctgaaccgcgctggcccgccggccgcctcg
cagcccaaagaccagcccgccgggaagaaagagggcagccacgctccgacgccggagaaa
cccgcccggcaggagaagctcaggaccccgaagaaagaggcgtcggaggagaaacccaag
tccaagcccccgtcgccgatggccaaaagcacccagagtaaaaacaaaccggcagaggcc
gagattcagaagtcatccgacggcacgaagaaagatcccaggctgaagaaacggccgcag
gacaagacgccctacaagacgggcgactccaaagacgaggagacgaaggagaagagaaga
tgccttgacaagaaggagagggaggagagggaggagtccgcggcgcgtggactcgaccct
caccggctcaccaaggggaagctggcgaacggcgcggtggccaaacacgacgagtccgcg
gagaggctcgagttcaagacaggcggcaacgcgcgcacgcacgccaggaagcgcacccgc
tcgcggtccaggtctcgctcgccctcggccgccgccgcctcctcctccccgaagaggaag
gacaggcgctcgcccaaaagccgaacgcggagcagctctctgtcgccgtcgccgtcgcac
aaacagccgggcaagccgcgcagggtcgacccggagcacccgggcaagcccggccgagag
gaccggctcgcgcccaagaagaacccatcggagagccggaggtccaagaggccggctgag
gaccggaggtccgagtccagagactcccattccccgcggagccacgacggaggcgccaag
gaggccaaggaggcgccgcaccgctggaggagcggctgggaggagaacaaacatccgaag
ctgccggaggattctcacgtgaagcctgcgccgccgagacacaaaccgtacggcaccccg
actcgccccaccaccccccgaaccccgaagcaccgtctcagcgtcgacgccaacctgcag
ataccagaagtcctcaactccgcctccaagaaggatctgctcaggagggccagcaagcgt
ctggagagcggggagatttcccaggaggacttcctgaacatggcccaccagatcaagcac
ttcttccagtatcaggaggagaagcagcgctccgacagctgggacgactccgccgactat
cccgccaagaaactgctagcctcgccgcccccctcctccgcggtgccgcggccgcacgac
gccatggacgccgcgcagctgtcgtactacgaacacaagtccaaactgaggaagacgcag
gtgaaccgagcgcgcgccgcaggagaggagtgggacggagaggagagttcggaggacggc
gagggagaagggacgggcgagaagacggggggagcccgcagtgccggactaccaccgacg
cataaatacagccaggcagtacgggacaggcaaggcgaaaggaggagtaaagagcacgag
gagccgaggcctccgctcggcccaatgatcgaagagtacaaccacggcaaagagttcccc
acgctgaaatctctaccgggccttcgcttcaggaggagagccgacccccgagagcccaag
aggtcagaggtcaggttctggagctgcggggtgtcagggtctcgatcagtgacacttcag
cagggcgagcgggagtggacctcgccgctgaccgagcgacagcgcttcgccgaacgcgag
gtgcagaagagcggctacgacgcgccgcgccggtacggcccgcctggcgacccacggaga
ccagaggtcccgccgccgcctccgcctccgctgctcgccggcaccggagtccacatgacc
tccccgagcccggccggtctggaggccccggcgccccggatcgagcgcgagcgcctgtct
ccgttgcaccagaaggagctcgcggagctcgcggagctcagtccgcgctttgagagcccc
aacagcgagcactcggacgacggacccctcagtctggacccccacgccccccctaatcac
cctctcccgcccccgaagtccatcctgaagccgcgtggcgggccgctggcgcccgtgaga
cagcacagcgactcgccgggacacacgccgccgcacgacggagccggacacccgccgccg
ccgccgccgccgcagcagcagcagcgctacgacgggccgggacacatgggcccctccaga
ccgagcccacagggggggtggtacgagagcagccgctacgacgactcgccgcgcttcgaa
gggccaccgcaccaccaccaggggccccgcaggttcaacaacggcagggtggtggtggtg
gtggtggggggtggtgggggggggagcggaccgcctcatcacaacatgcccgagaggttc
gatggcccccacatgtcccacgccctacctcacggaccaatgggacgcttcgacggtccg
cctcaccctcagggcccggtgaggttcgagggtcccatcggtgggggtcagcagcagccc
cccgtcagatttgagggcccgggacactttgatggccccatgcagcgctttgagggccct
cgccgcttcgataccaacatggcaccgggccctggctctggaccaatgggcttccagcag
cagcagcagcgaccaatgcgcttcgatggccctccaaaccagatgggcccgatgcggttt
gagggcccgggccagcaggggggccccaggtttgacctccccagcgtgcaccatcagggc
gggcccccgctgtacgagcagggcccgatgaggttcccgcctcaacacaacctgcagcag
cccatgaggccgatggccccccccatgtacgaaaaccccctccccccgcagcagaacttc
agcatgggggggggcccccagtgcttcccggagcccatgaacgcgcagttcccccccgcg
gggcccatggcgttcccggctcagcccaacatgcagccgggagggagcttcaacatgcag
ccaggccccgcccccttcagccaggcaggccccgcccccttcagccaggcaggccccgcc
cccttctacaaccccacggccccccccaccgtcagcatgcagcagccggtcaacatgttg
gggaacctgaaccagccgttcctgcctcagaaccccgtgccttttggacagcagactctg
caggttgctcctcccgagaaccacttcggtcaggttgacgtcaacgacctgctctccaaa
ctcatctccaacggcatcatcaaaccctcgcagcccgacgtggtgcccaccgccaccacc
gaaccgacgtcggcgcctgcagcagcgccgcccccggtggaggaggaggaagaggaggcc
gagctggaggaggaagacgatttccccgacttaacaagcttcaacgtcgacgacatgaaa
ctgcgctacgagagcgtggtgacccgactctactcggggaaccagtgctgcctgtgcagc
atgaggttcaccgccacccagaccgacctgtacgctgaccacctggactggcacttcaga
cagaaccacgccggcaaagtcgccagcaagaagatcacccatcgccgctggtactacggc
ctcacggactggatagagtttgaggagatcgcagacctggaggagagagccaagagtcac
ttcttcgagaaggagaacgaggaggaggtgcagaagagccaggcggccgccaaggagaag
gagttccagagcgtgaaggccaccaaggaccaagtgggagagctgtgtgagatctgccag
gaggcgtttgagacgtactgggtggaggaagaggaggactggttcctgaagaacgcactc
agggtcgatgacaagaacttccatcctgcctgttttgaagattataaaaatacgttcctg
gactccacgccctctcccaacaaggctctgacggaccacccgctgggagccttcgtcgtg
aagagggaggaagaggaggaggaggaggaaggaggagacgccacttcttcgtgtgccgtc
gctgccgccgccgccatcgccgctctcgccaacgccacaaccgccaccgccacggtcaaa
caggaagcggagtccgagccgcccgccgacgtgaaaacggaagagacggaagttttaatg
gacaaagagcaaagtggagagaagagagagtga
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integrated database retrieval system
