Perca flavescens (yellow perch): 114567629
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Entry
114567629 CDS
T07494
Symbol
col1a2
Name
(RefSeq) collagen alpha-2(I) chain isoform X1
KO
K06236
collagen type I alpha
Organism
pflv
Perca flavescens (yellow perch)
Pathway
pflv04510
Focal adhesion
pflv04512
ECM-receptor interaction
pflv04518
Integrin signaling
pflv04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pflv00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
114567629 (col1a2)
04518 Integrin signaling
114567629 (col1a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
114567629 (col1a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
114567629 (col1a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pflv00536
]
114567629 (col1a2)
Glycosaminoglycan binding proteins [BR:
pflv00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
114567629 (col1a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
114567629
NCBI-ProteinID:
XP_028452515
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Position
14:20863474..20883690
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AA seq
1356 aa
AA seq
DB search
MLSFVDTRILLLLAVTSYLASCQFSGSAKGPRGDKGPRGDRGPKGPNGRDGKPGLPGPAG
PPGPPGLGGNFAAQYDGSKAPDPAPGPPGLMGPRGPPGPPGPPGPQGHTGHAGEPGEPGQ
TGPLGARGPPGPPGKSGEDGNNGRPGKPGDRGTPGPQGARGFPGTPGLPGMKGHRGYTGL
DGRKGEIGGAGAKGEPGAHGAAGSPGLAGARGMSGERGRAGPAGPAGARGADGNVGPAGP
AGPLGAAGPPGFPGGPGPKGEIGPAGATGPSGAQGQRGEPGLNGAVGPVGPAGNPGANGL
NGAKGAAGTPGVAGAPGFPGPRGGPGPQGPQGPAGQRGLSGDPGAQGVKGDTGPKGEPGN
SGPQGPPGPQGEEGKRGPTGELGATGPAGARGARGSPGSRGMPGSEGRTGPVGMPGARGA
TGAAGPRGPPGDAGRAGESGPAGVRGLPGSPGSSGPPGKEGASGPAGQDGRTGPPGPTGP
RGQPGNIGFPGPKGPSGDAGKPGDKGSTGPTGLRGLPGPDGNNGATGPTGPAGGPGEKGE
QGAAGAPGFQGLPGPAGGPGEAGKPGERGIPGDHGVAGPAGSKGERGNPGAAGASGAQGP
IGPRGPAGAPGSDGGKGEPGAAGAAGAAGHQGPGGMPGERGAAGVPGVKGEKGEGGHRGP
EGNAGRDGSRGMPGPAGPPGPTGANGDKGESGGFGPSGPAGPRGVPGERGEVGPAGSAGF
AGPPGADGQTGARGERGPAGVKGETGAAGPAGPAGQSGPAGPAGAAGPAGPRGDNGPPGL
TGFSGAAGRVGAAGPAGIVGPPGQAGPAGKDGPRGLRGDPGPAGPSGEQGMVGPQGLSGE
KGPSGEPGPAGPAGPPGTSGPLGLQGFVGLPGARGDRGAPGGPGGLGEPGRVGPPGPSGA
RGPPGNIGLPGMTGPQGEAGREGSPGNDGPPGRPGNPGFKGDRGEPGPAGSMGLAGTPGP
AGPTGASGRPGNRGEAGPSGPAGPAGAAGARGAAGPAGIRGEKGVAGEKGERGMKGLRGH
AGLQGMPGPSGPSGDTGSAGPSGAAGPRGPAGPHGPPGKDGRAGSHGTIGSPGARGPPGY
VGPAGPAGAPGLPGPPGPAGGGYDVSGYDEYRADQPALRAKDYEVDATIKSLNTQIENLL
TPEGSRKNPARTCRDIKLSHPDWSSGFYYIDPNQGCINDAIKVFCDFTTRETCIHAHPES
IAQKNWYRSTEGKKHVWFGETINGGTEFTYNDETISPQSMATQLAFMRLLSNQASQNITY
HCKNSNAYMSEETGNLKKAVVLQGSNDVELRAEGNSRFTFSVLEDGCTRHTGEWSKTVIE
YRTNKPSRLPILDIAPLDIGGADQEFGLDIGPVCFK
NT seq
4071 nt
NT seq
+upstream
nt +downstream
nt
atgctcagctttgtggatactcggattctgttgctgcttgcagtaacttcatacctagcg
tcatgccaattctcgggaagcgcaaagggtcccagaggagacaaaggacctcgaggtgac
aggggtcctaagggcccaaatggaagagatggcaaacccggactccctggccctgctggc
ccccctggtccccctggactcggaggaaactttgctgctcagtatgatggttcaaaagct
ccggatcccgcccctggacccccgggtttgatgggccctagaggccctcccggacctcct
ggaccccctggacctcagggacacaccggacatgctggtgagcccggagagcctggacag
actggccccctcggtgctcgtggcccacctggaccccctggcaaatctggagaggacggt
aacaacggcagacctggtaagcccggagacagaggaacccccggcccacagggcgctcgt
ggattccccggaacccctggacttccaggaatgaagggacacagaggttacactggtctg
gatggacgcaagggagagattggtggtgctggtgctaagggtgagcctggtgcccacgga
gctgctggaagtcctggactggctggagctcgtggtatgtctggagagagaggtcgtgct
ggacctgctggccctgctggtgcccgtggtgctgacggcaacgttggacccgctggccct
gctggtccccttggagctgctggtcccccaggtttccccggtggccccggacccaaagga
gagattggacctgctggagctactggcccatctggagctcagggacaaagaggagagcct
ggtctcaatggtgctgttggccccgtcggtcccgctggtaaccctggtgctaatggtctg
aacggagccaagggagctgctggcacccctggtgttgctggagctcctggcttccctgga
ccaagaggaggacctggacctcagggccctcagggtcctgctggacagagaggcctttct
ggagatcctggtgctcagggtgttaagggagataccggacccaaaggagagcctggtaac
tctggacctcagggaccccccggacctcagggtgaggagggcaagagaggaccaactggt
gagcttggtgccactggacctgctggagcccgtggagctagaggaagccctggcagccgt
ggtatgcctggtagtgagggaagaactggcccagttggcatgcccggtgcccgtggtgcc
actggtgctgctggacctcgtggaccacctggagatgctggccgtgccggagagtctggc
ccagctggtgtcaggggtctcccaggaagccctggaagctcaggacccccaggaaaggag
ggagcctctggccctgctggacaagatggccgcactggacctcccggcccaaccggacca
agaggccaacccggaaacattggtttccccggacccaaaggaccttctggtgatgctggc
aagcctggagataagggatccactggtcccactggtctgagaggactccctggacctgat
ggcaacaatggagccactggcccaactggacccgctggcggccctggtgagaagggagag
cagggagctgctggagctcctggcttccagggtctgcctggacccgctggaggtcctggg
gaggctggcaagcccggagagagaggaatcccaggggaccatggagttgctggacctgct
ggttccaagggagagcgtggtaaccctggtgctgccggagcttctggcgctcagggaccc
attggaccccgtggacccgctggagcccccggaagcgatggtggcaagggagagcctggc
gctgctggagctgctggtgctgctggacaccagggaccaggtggcatgcctggtgagcgc
ggagccgctggtgttcctggagtcaagggagagaagggagagggtggacacagaggacct
gaaggcaatgctggcagagatggtagccgtggtatgcccggacctgctggacctcctgga
cccactggagctaatggtgataagggtgagagcggtggctttggaccctccggccctgct
ggacctcgtggagtccctggagagcgtggagaggttggccctgctggatctgctggattc
gctggaccccctggcgctgatggtcagactggagcaagaggagagcgtggacctgccgga
gttaagggagaaactggcgccgctggccctgctggacccgctggacagtctggacctgct
ggtcctgctggtgctgctggacctgctggtcctcgtggagacaacggcccacctggtctg
actggtttctctggtgctgctggcagagttggtgctgctggtcctgctggtattgttgga
ccccctggccaagctggtcccgctggtaaggatggtcctcgtggtctccgtggtgatcct
ggtcccgctggtccttctggagagcagggtatggttggaccacagggtctatctggagag
aaaggaccctctggagagcctggtcccgctggtccagctggtccccctggaaccagtggt
cctcttggacttcagggattcgttggtctgcccggtgctagaggagatcgtggtgcaccc
ggtggtcctggtggtttgggagagcctggtagagttggacctcctggtccctctggagcc
cgtggtccccctggcaacattggcctgcctggtatgaccggacctcagggagaggctgga
cgtgagggtagccccggtaacgatggaccccctggccgccctggtaatcctggattcaag
ggagaccgtggtgagcccggacctgctggttccatgggacttgctggtacccccggacct
gctggacccactggagcttctggcagacctggaaaccgtggagaggctggtccatctggt
cccgctggacccgctggcgccgctggagctagaggtgccgctggacctgctggaatccgt
ggtgagaagggagttgctggagaaaaaggagagagaggcatgaagggtctgcgtggacat
gctggtctccagggaatgcccggaccttctggaccctctggtgacactggatctgctgga
ccaagtggagctgctggaccaagaggacctgctggaccccacggaccccctggtaaggat
ggcagagctggcagccatggtactattggctctcctggtgctcgtggaccccctggatac
gtcggacctgctggtcctgctggagctcccggtctgcctggacctcccggccccgctggt
ggtggatatgatgtctctggatatgatgagtacagagctgatcagcccgctctgagagcc
aaggactacgaggtcgatgccaccatcaagtccctcaacactcagatcgagaacctgctc
acccctgagggatccaggaagaaccctgcccgcacctgccgtgacatcaagctcagccac
cccgactggagcagcggattctactatattgaccccaaccagggatgcatcaatgatgcc
atcaaggtgttctgcgacttcaccacccgcgagacctgcatccatgcccaccccgagagc
atcgcccagaagaactggtacagaagcaccgagggcaagaagcacgtctggttcggagag
accatcaacggtggtacagagtttacctacaacgacgagaccatcagcccacagagcatg
gccacccaacttgccttcatgcgcctgctgtccaaccaggctagccagaacatcacctac
cattgcaagaacagcaacgcctacatgagtgaggagaccggtaacctgaagaaggctgtg
gtgctccagggctccaacgatgtagagctaagagccgagggcaacagccgcttcaccttc
tccgtgctggaggacggctgcactagacacactggtgaatggagcaagacagtgattgag
tacagaacgaataaaccatctcgcctgcccatcctcgacattgcacctttggacattggt
ggagctgatcaggagtttggtttggacattggcccagtctgtttcaaataa
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